Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0560
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0297 - 23921648-23921758,23922011-23922089,23922774-239228...    29   2.8  
04_04_0514 - 25816808-25817318,25817865-25817994,25818083-25818215     29   2.8  
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420...    29   3.7  
06_03_0613 + 22748223-22749513,22750046-22750179,22751066-227513...    29   4.9  
03_06_0316 + 33091194-33091370,33091451-33092155                       29   4.9  
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078     28   6.5  
10_08_0339 + 16922509-16923876,16923941-16924384,16924469-169246...    28   8.6  
05_03_0035 - 7592177-7592938                                           28   8.6  

>05_05_0297 -
           23921648-23921758,23922011-23922089,23922774-23922822,
           23923180-23923255,23923693-23923767,23923862-23923992,
           23924830-23924935
          Length = 208

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 339 PDNKRCKIEQMFELQHLKTKFPS-AQKAQGAPQSSGKSHDEPKTAPKSAAEREIGK 175
           P  ++ K E   +LQ  ++  PS AQ+A G P+   K     +  P + A REI K
Sbjct: 7   PAVRKSKAEPKKKLQFERSPRPSKAQRAGGTPRQQTKQRKPHRFRPGTVALREIRK 62


>04_04_0514 - 25816808-25817318,25817865-25817994,25818083-25818215
          Length = 257

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -1

Query: 354 IIVLLPDNKRCKIEQMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPKTAPKSAA 193
           I   LP     +I+ ++   HLK +  +  +      S GK H +PK+A K AA
Sbjct: 92  IAARLPGRTDNEIKNVWHT-HLKKRLDAPAQGGHVAASGGKKHKKPKSAKKPAA 144


>07_01_0566 +
           4207894-4207974,4208090-4208144,4208671-4208759,
           4209742-4209794,4209966-4210120,4210201-4210528,
           4210618-4210730,4211394-4211538,4211951-4212259,
           4212340-4212420,4212989-4213349
          Length = 589

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -1

Query: 297 QHLKTKFPSA---QKAQGAPQSSGKSHDEPKTAPKSAAEREIGKRTTRRK 157
           +H KTK  S    +K++ + +SS    D  KT   S+     G+RTTR K
Sbjct: 237 KHKKTKRKSRGTKRKSKRSYRSSSDDSDSSKTGGSSSDSESEGRRTTRTK 286


>06_03_0613 +
           22748223-22749513,22750046-22750179,22751066-22751309,
           22751401-22751609,22751691-22751740,22751933-22752053,
           22752138-22752383
          Length = 764

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = -3

Query: 268 SKSARSSSVIWEIS*RTQDGTKISGRARNRQEDDSSKVVWRYLELIHRCNTKNLV 104
           S   +SS V+   + + QDG+++S R    +   S + + +Y+E+I +   ++LV
Sbjct: 465 SNLIKSSPVVKHYNGQLQDGSRVSLRCLKLKPKYSPQSLTQYMEIISKLRHRHLV 519


>03_06_0316 + 33091194-33091370,33091451-33092155
          Length = 293

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -1

Query: 345 LLPDNKRCKIEQMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPKTA--PKSAAE 190
           L+   K  K++  ++L    T+ P+A K +  P ++ K   +PK A  PK+AA+
Sbjct: 106 LVAAGKLTKVKNSYKLP--PTRAPAAAKPKAKPAAAAKPKPKPKAAAKPKAAAK 157


>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
          Length = 1034

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 10/108 (9%)
 Frame = -1

Query: 705 EMASRRKVLLFHGIPESDATDPATAIVGILTNQMKVAGCTEEDLTACYRLG-SNTNKPRP 529
           E +S RK+++  G      + P    V  L    +   CT++ L  C         K  P
Sbjct: 332 EASSWRKIIIGQGFYSQGRSVPIGPDVVALKGTQQTLKCTQKGLILCVDYSVMPFRKAGP 391

Query: 528 IL------VRFLSLRRCNEVWKNKTL---LKGSRVIISEFLTKSRHDV 412
           +L      VR+L  R      +  TL   LKG RV ++   TK ++ V
Sbjct: 392 VLDLVQKSVRYLDYRTTLNKHQLDTLKNELKGQRVTVNHRRTKQKYIV 439


>10_08_0339 +
           16922509-16923876,16923941-16924384,16924469-16924655,
           16924750-16925702
          Length = 983

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
 Frame = -1

Query: 342 LPDNKRCKIEQMFELQHLKTKFPSAQKAQGAPQS---SGKSHDEPKTAPKSAAER 187
           LP   RC  +  F     KT  PS Q  +G P+     G SH  P+ +     +R
Sbjct: 676 LPPLTRCNQDSGFFKLWRKTVLPSCQAPEGGPRGVGVGGGSHHVPRPSISRGTQR 730


>05_03_0035 - 7592177-7592938
          Length = 253

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -1

Query: 288 KTKFPSAQKAQGAPQ--SSGKSHDEPKTAPKSAAERE 184
           KT+  S  KA+  P+  S  KS  EP++ P++ AER+
Sbjct: 194 KTEPKSESKAEPKPERKSYSKSKPEPESKPEAKAERQ 230


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,948,105
Number of Sequences: 37544
Number of extensions: 426780
Number of successful extensions: 1140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)