Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0560
(723 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6319| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 5e-08
SB_57207| Best HMM Match : Transposase_22 (HMM E-Value=0.17) 53 3e-07
SB_53000| Best HMM Match : Transposase_22 (HMM E-Value=0.026) 52 4e-07
SB_44235| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 5e-05
SB_54016| Best HMM Match : Dehydratase_SU (HMM E-Value=1.6) 42 7e-04
SB_53689| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_23626| Best HMM Match : WXG100 (HMM E-Value=2) 42 7e-04
SB_22823| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_58004| Best HMM Match : WXG100 (HMM E-Value=2) 42 7e-04
SB_57509| Best HMM Match : WXG100 (HMM E-Value=2) 42 7e-04
SB_46219| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_34971| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_23474| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12) 42 7e-04
SB_18197| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_15583| Best HMM Match : WXG100 (HMM E-Value=2) 42 7e-04
SB_5091| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_22222| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_19857| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.011
SB_41384| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_45202| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.31
SB_26976| Best HMM Match : Exo_endo_phos (HMM E-Value=5.3) 32 0.41
SB_31647| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.54
SB_23541| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_6427| Best HMM Match : RBM1CTR (HMM E-Value=0.42) 31 0.72
SB_39979| Best HMM Match : RVT_1 (HMM E-Value=4.6e-12) 30 1.7
SB_37641| Best HMM Match : WXG100 (HMM E-Value=2) 30 1.7
SB_57452| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_13857| Best HMM Match : Thymosin (HMM E-Value=1.8) 30 1.7
SB_936| Best HMM Match : DUF1127 (HMM E-Value=3.2) 30 1.7
SB_48988| Best HMM Match : DUF1127 (HMM E-Value=1.5) 30 2.2
SB_5507| Best HMM Match : TP2 (HMM E-Value=4) 29 2.9
SB_2704| Best HMM Match : TP2 (HMM E-Value=6.9) 29 2.9
SB_1755| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_5898| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_22154| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_18971| Best HMM Match : PWP2 (HMM E-Value=4) 29 3.8
SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9) 29 5.0
SB_59010| Best HMM Match : rve (HMM E-Value=0.0052) 28 6.7
SB_39791| Best HMM Match : RVT_1 (HMM E-Value=0.083) 28 6.7
SB_25470| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_27943| Best HMM Match : Pox_A32 (HMM E-Value=0.047) 28 6.7
SB_9870| Best HMM Match : GspM (HMM E-Value=1.9) 28 6.7
SB_4563| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_48252| Best HMM Match : Ribosomal_60s (HMM E-Value=1.1) 28 8.8
SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44) 28 8.8
>SB_6319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 55.2 bits (127), Expect = 5e-08
Identities = 30/97 (30%), Positives = 50/97 (51%)
Frame = -1
Query: 717 LDRHEMASRRKVLLFHGIPESDATDPATAIVGILTNQMKVAGCTEEDLTACYRLGSNTNK 538
LD + R +LLF+ IPE D +P +V + +MK+ +L +R+G++
Sbjct: 22 LDLRTRSMRNNLLLFN-IPEKDGENPHEVLVNTMKVEMKLQNVDAVELERVHRIGNSKTS 80
Query: 537 PRPILVRFLSLRRCNEVWKNKTLLKGSRVIISEFLTK 427
RP++ +FL + V KN LKG+ + I+E K
Sbjct: 81 SRPLVAKFLRFQDRERVGKNAHALKGTNIGIAEQFPK 117
>SB_57207| Best HMM Match : Transposase_22 (HMM E-Value=0.17)
Length = 262
Score = 52.8 bits (121), Expect = 3e-07
Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 4/148 (2%)
Frame = -1
Query: 717 LDRHEMASRRKVLLFHGIPESDATDPATAIVGILTNQMKVA-GCTEEDLTACYRLG-SNT 544
LD E SRR + GIP+++ + ++ I T + K+ D+ +R+G S
Sbjct: 106 LDGLEQYSRRNNIRIDGIPQTEEKEDTDRLI-IETIKAKIGIVIAPADIWRSHRVGHSKG 164
Query: 543 NKPRPILVRFLSLRRCNEVWKNKTLL--KGSRVIISEFLTKSRHDVFLEARSHFGVKRCW 370
+ PR I+ +F+ ++ K K L K ++ ++E LTK R D S + + W
Sbjct: 165 STPRQIICKFVRHNIKAKILKEKKSLREKKDKLRVNEDLTKGRLDAIKAINSKLDIYKLW 224
Query: 369 TTDGKIIVLLPDNKRCKIEQMFELQHLK 286
T DG I V L +K E + L+ LK
Sbjct: 225 TIDGTIHVRLNKDKDKAKEIIHSLRQLK 252
>SB_53000| Best HMM Match : Transposase_22 (HMM E-Value=0.026)
Length = 301
Score = 52.4 bits (120), Expect = 4e-07
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 4/148 (2%)
Frame = -1
Query: 717 LDRHEMASRRKVLLFHGIPESDATDPATAIVGILTNQMKVA-GCTEEDLTACYRLG-SNT 544
LD E SRR + GIP+++ + ++ I T + K+ D+ +R+G +
Sbjct: 145 LDDLEQYSRRNNIRIDGIPQTEEKEDTDRLI-IETIKAKIGIVIAPADICRSHRVGQAKG 203
Query: 543 NKPRPILVRFLSLRRCNEVWKNKTLL--KGSRVIISEFLTKSRHDVFLEARSHFGVKRCW 370
+ PR I+ +F+ ++ K K L K ++ ++E LTK R D S + + W
Sbjct: 204 SNPRQIICKFVRHNIKAKILKEKKSLREKKEKLRVNEDLTKGRLDAIKAINSKLDIYKLW 263
Query: 369 TTDGKIIVLLPDNKRCKIEQMFELQHLK 286
T DG I V L +K E + L+ LK
Sbjct: 264 TIDGTIHVRLNKDKDKAKEIIHSLRQLK 291
>SB_44235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 45.2 bits (102), Expect = 5e-05
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Frame = -1
Query: 717 LDRHEMASRRKVLLFH--GIPESDATDPATAIVGILTNQMKVAGCTEEDLTACYRLGSNT 544
LD + R +L F IPE + +P +V + +MK+ +L R+ +
Sbjct: 22 LDLRTRSMRNNLLFFEFFNIPEKNGENPHEVLVNTMIVEMKLQNVDAIELERVNRIANRK 81
Query: 543 NKPRPILVRFLSLRRCNEVWKNKTLLKGSRVIISEFLTK 427
RP++ +FL + V KN LKG+ + I+E K
Sbjct: 82 TSSRPLVAKFLRFQDRERVRKNAHALKGTNIGIAEQFPK 120
>SB_54016| Best HMM Match : Dehydratase_SU (HMM E-Value=1.6)
Length = 252
Score = 41.5 bits (93), Expect = 7e-04
Identities = 26/88 (29%), Positives = 41/88 (46%)
Frame = -1
Query: 717 LDRHEMASRRKVLLFHGIPESDATDPATAIVGILTNQMKVAGCTEEDLTACYRLGSNTNK 538
LD + RR L F GIP+ D DP + I T + E+D++ +RL
Sbjct: 106 LDEQQQYGRRDCLEFVGIPKVDNDDPVKLV--IETAALAGVEVKEDDISIAHRLKPTKKG 163
Query: 537 PRPILVRFLSLRRCNEVWKNKTLLKGSR 454
I+ +F+ + +EV+ N+ LK R
Sbjct: 164 QDRIIAKFIRRSKRDEVYSNRKNLKQKR 191
>SB_53689| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 41.5 bits (93), Expect = 7e-04
Identities = 26/88 (29%), Positives = 41/88 (46%)
Frame = -1
Query: 717 LDRHEMASRRKVLLFHGIPESDATDPATAIVGILTNQMKVAGCTEEDLTACYRLGSNTNK 538
LD + RR L F GIP+ D DP + I T + E+D++ +RL
Sbjct: 106 LDEQQQYGRRDCLEFVGIPKVDNDDPVKLV--IETAALAGVEVKEDDISIAHRLKPTKKG 163
Query: 537 PRPILVRFLSLRRCNEVWKNKTLLKGSR 454
I+ +F+ + +EV+ N+ LK R
Sbjct: 164 QDRIIAKFIRRSKRDEVYSNRKNLKQKR 191
>SB_23626| Best HMM Match : WXG100 (HMM E-Value=2)
Length = 279
Score = 41.5 bits (93), Expect = 7e-04
Identities = 26/88 (29%), Positives = 41/88 (46%)
Frame = -1
Query: 717 LDRHEMASRRKVLLFHGIPESDATDPATAIVGILTNQMKVAGCTEEDLTACYRLGSNTNK 538
LD + RR L F GIP+ D DP + I T + E+D++ +RL
Sbjct: 106 LDEQQQYGRRDCLEFVGIPKVDNDDPVKLV--IETAALAGVEVKEDDISIAHRLKPTKKG 163
Query: 537 PRPILVRFLSLRRCNEVWKNKTLLKGSR 454
I+ +F+ + +EV+ N+ LK R
Sbjct: 164 QDRIIAKFIRRSKRDEVYSNRKNLKQKR 191
>SB_22823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 41.5 bits (93), Expect = 7e-04
Identities = 26/88 (29%), Positives = 41/88 (46%)
Frame = -1
Query: 717 LDRHEMASRRKVLLFHGIPESDATDPATAIVGILTNQMKVAGCTEEDLTACYRLGSNTNK 538
LD + RR L F GIP+ D DP + I T + E+D++ +RL
Sbjct: 106 LDEQQQYGRRDCLEFVGIPKVDNDDPVKLV--IETAALAGVEVKEDDISIAHRLKPTKKG 163
Query: 537 PRPILVRFLSLRRCNEVWKNKTLLKGSR 454
I+ +F+ + +EV+ N+ LK R
Sbjct: 164 QDRIIAKFIRRSKRDEVYSNRKNLKQKR 191
>SB_58004| Best HMM Match : WXG100 (HMM E-Value=2)
Length = 235
Score = 41.5 bits (93), Expect = 7e-04
Identities = 26/88 (29%), Positives = 41/88 (46%)
Frame = -1
Query: 717 LDRHEMASRRKVLLFHGIPESDATDPATAIVGILTNQMKVAGCTEEDLTACYRLGSNTNK 538
LD + RR L F GIP+ D DP + I T + E+D++ +RL
Sbjct: 106 LDEQQQYGRRDCLEFVGIPKVDNDDPVKLV--IETAALAGVEVKEDDISIAHRLKPTKKG 163
Query: 537 PRPILVRFLSLRRCNEVWKNKTLLKGSR 454
I+ +F+ + +EV+ N+ LK R
Sbjct: 164 QDRIIAKFIRRSKRDEVYSNRKNLKQKR 191
>SB_57509| Best HMM Match : WXG100 (HMM E-Value=2)
Length = 206
Score = 41.5 bits (93), Expect = 7e-04
Identities = 26/88 (29%), Positives = 41/88 (46%)
Frame = -1
Query: 717 LDRHEMASRRKVLLFHGIPESDATDPATAIVGILTNQMKVAGCTEEDLTACYRLGSNTNK 538
LD + RR L F GIP+ D DP + I T + E+D++ +RL
Sbjct: 106 LDEQQQYGRRDCLEFVGIPKVDNDDPVKLV--IETAALAGVEVKEDDISIAHRLKPTKKG 163
Query: 537 PRPILVRFLSLRRCNEVWKNKTLLKGSR 454
I+ +F+ + +EV+ N+ LK R
Sbjct: 164 QDRIIAKFIRRSKRDEVYSNRKNLKQKR 191
>SB_46219| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 41.5 bits (93), Expect = 7e-04
Identities = 26/88 (29%), Positives = 41/88 (46%)
Frame = -1
Query: 717 LDRHEMASRRKVLLFHGIPESDATDPATAIVGILTNQMKVAGCTEEDLTACYRLGSNTNK 538
LD + RR L F GIP+ D DP + I T + E+D++ +RL
Sbjct: 106 LDEQQQYGRRDCLEFVGIPKVDNDDPVKLV--IETAALAGVEVKEDDISIAHRLKPTKKG 163
Query: 537 PRPILVRFLSLRRCNEVWKNKTLLKGSR 454
I+ +F+ + +EV+ N+ LK R
Sbjct: 164 QDRIIAKFIRRSKRDEVYSNRKNLKQKR 191
>SB_34971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 41.5 bits (93), Expect = 7e-04
Identities = 26/88 (29%), Positives = 41/88 (46%)
Frame = -1
Query: 717 LDRHEMASRRKVLLFHGIPESDATDPATAIVGILTNQMKVAGCTEEDLTACYRLGSNTNK 538
LD + RR L F GIP+ D DP + I T + E+D++ +RL
Sbjct: 106 LDEQQQYGRRDCLEFVGIPKVDNDDPVKLV--IETAALAGVEVKEDDISIAHRLKPTKKG 163
Query: 537 PRPILVRFLSLRRCNEVWKNKTLLKGSR 454
I+ +F+ + +EV+ N+ LK R
Sbjct: 164 QDRIIAKFIRRSKRDEVYSNRKNLKQKR 191
>SB_23474| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12)
Length = 623
Score = 41.5 bits (93), Expect = 7e-04
Identities = 26/88 (29%), Positives = 41/88 (46%)
Frame = -1
Query: 717 LDRHEMASRRKVLLFHGIPESDATDPATAIVGILTNQMKVAGCTEEDLTACYRLGSNTNK 538
LD + RR L F GIP+ D DP + I T + E+D++ +RL
Sbjct: 106 LDEQQQYGRRDCLEFVGIPKVDNDDPVKLV--IETAALAGVEVKEDDISIAHRLKPTKKG 163
Query: 537 PRPILVRFLSLRRCNEVWKNKTLLKGSR 454
I+ +F+ + +EV+ N+ LK R
Sbjct: 164 QDRIIAKFIRRSKRDEVYSNRKNLKQKR 191
>SB_18197| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1153
Score = 41.5 bits (93), Expect = 7e-04
Identities = 26/88 (29%), Positives = 41/88 (46%)
Frame = -1
Query: 717 LDRHEMASRRKVLLFHGIPESDATDPATAIVGILTNQMKVAGCTEEDLTACYRLGSNTNK 538
LD + RR L F GIP+ D DP + I T + E+D++ +RL
Sbjct: 106 LDEQQQYGRRDCLEFVGIPKVDNDDPVKLV--IETAALAGVEVKEDDISIAHRLKPTKKG 163
Query: 537 PRPILVRFLSLRRCNEVWKNKTLLKGSR 454
I+ +F+ + +EV+ N+ LK R
Sbjct: 164 QDRIIAKFIRRSKRDEVYSNRKNLKQKR 191
>SB_15583| Best HMM Match : WXG100 (HMM E-Value=2)
Length = 279
Score = 41.5 bits (93), Expect = 7e-04
Identities = 26/88 (29%), Positives = 41/88 (46%)
Frame = -1
Query: 717 LDRHEMASRRKVLLFHGIPESDATDPATAIVGILTNQMKVAGCTEEDLTACYRLGSNTNK 538
LD + RR L F GIP+ D DP + I T + E+D++ +RL
Sbjct: 106 LDEQQQYGRRDCLEFVGIPKVDNDDPVKLV--IETAALAGVEVKEDDISIAHRLKPTKKG 163
Query: 537 PRPILVRFLSLRRCNEVWKNKTLLKGSR 454
I+ +F+ + +EV+ N+ LK R
Sbjct: 164 QDRIIAKFIRRSKRDEVYSNRKNLKQKR 191
>SB_5091| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 40.3 bits (90), Expect = 0.002
Identities = 25/85 (29%), Positives = 40/85 (47%)
Frame = -1
Query: 717 LDRHEMASRRKVLLFHGIPESDATDPATAIVGILTNQMKVAGCTEEDLTACYRLGSNTNK 538
LD + RR L F GIP+ D DP + I T + E+D++ +RL
Sbjct: 106 LDEQQQYGRRDCLEFVGIPKVDNDDPVKLV--IETAALAGVEVKEDDISIAHRLKPTKKG 163
Query: 537 PRPILVRFLSLRRCNEVWKNKTLLK 463
I+ +F+ + +EV+ N+ LK
Sbjct: 164 QDRIIAKFIRRSKRDEVYSNRKNLK 188
>SB_22222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 39.9 bits (89), Expect = 0.002
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Frame = -1
Query: 711 RHEMASRRKVLLFHGIPESDATDPATAIVGILTNQMKVAGCTEEDLTACYRLGS--NTNK 538
R + SRR+ L F GIPE + + I+ L +++ + D A +RLG + K
Sbjct: 16 RLDAYSRRENLNFKGIPEKEG-ESCENIIRDLLHELGFSNPQNIDFHAVHRLGKPRDGGK 74
Query: 537 PRPILVRFLSLRRCNEVWKNKTLLKGS 457
PRPI+ RF S + + ++ K L GS
Sbjct: 75 PRPIIARFNSRQDRDLDFRKKRKLVGS 101
>SB_19857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 37.5 bits (83), Expect = 0.011
Identities = 24/80 (30%), Positives = 38/80 (47%)
Frame = -1
Query: 693 RRKVLLFHGIPESDATDPATAIVGILTNQMKVAGCTEEDLTACYRLGSNTNKPRPILVRF 514
RR L F GIP+ D DP + I T + E+D++ +RL I+ +F
Sbjct: 18 RRDCLEFVGIPKVDNDDPVKLV--IETAALAGVEVKEDDISIAHRLKPTKKGQDRIIAKF 75
Query: 513 LSLRRCNEVWKNKTLLKGSR 454
+ + +EV+ N+ LK R
Sbjct: 76 IRRSKRDEVYSNRKNLKQKR 95
>SB_41384| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 33.5 bits (73), Expect = 0.18
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -3
Query: 682 PSVSWNPGVRCHRPSNSNC--GYINQPNEGGWLHRRGLNCLLSV 557
P + P R H PS + G+ ++PN G W+ R C+L V
Sbjct: 97 PRMRVRPSFRGHGPSGNRSAPGHFDRPNNGSWIQRGPPKCILHV 140
>SB_45202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 380
Score = 32.7 bits (71), Expect = 0.31
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 5/138 (3%)
Frame = -1
Query: 459 SRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLL-PDNKRCKIEQMFELQH 292
+++ ISE L+ ++F L AR K WT +GK+ + D++ I + +L H
Sbjct: 123 NKIYISESLSPGNRELFKAALSARHDLKFKYIWTQNGKVFLRKNNDSQAVLISKSQDLLH 182
Query: 291 LKTKFP-SAQKAQGAPQSSGKSHDEPKTAPKSAAEREIGKRTTRRK*YGGILNLFIDVTL 115
LK + +Q+ + A + K+ D T S R++ R YG + +T
Sbjct: 183 LKQREDHHSQEVESANLTGTKAFD---TVDHSILLRKLEHYGIRGIAYGWFSSY---LTN 236
Query: 114 KT*LSIRGSCNAFLNIIS 61
+ + GSC + L+ IS
Sbjct: 237 RKQFTQTGSCKSSLSSIS 254
>SB_26976| Best HMM Match : Exo_endo_phos (HMM E-Value=5.3)
Length = 297
Score = 32.3 bits (70), Expect = 0.41
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Frame = -1
Query: 711 RHEMASRRKVLLFHGIPESDATDPATAIVGILTNQMKVAGCTEEDLTACYRLGS--NTNK 538
R + S R+ L F GIPE + + I+ L +++ + A +RLG + K
Sbjct: 16 RLDAYSLREHLSFKGIPEKEG-ESCENIIRDLLHELGFSNPQNIGFHAVHRLGKPRDGGK 74
Query: 537 PRPILVRFLSLRRCNEVWKNKTLLKGSRVIISEFLT 430
P PI+ R +S + + ++ K L GS ++T
Sbjct: 75 PSPIIARVISRQDRDLDFRKKRKLVGSTCYPGVYIT 110
>SB_31647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 31.9 bits (69), Expect = 0.54
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = -1
Query: 468 LKGSRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLLPDNKRCKIEQMFEL 298
L + + ISE LT + +F L + F K WT GK VL+ ++ Q+ L
Sbjct: 297 LADNSIYISESLTANNKAIFKGALSFKKEFRFKFIWTVHGK--VLIRKDEHSPAIQIKSL 354
Query: 297 QHLKTKFPSAQKAQGAPQSS 238
QHL + Q APQ S
Sbjct: 355 QHL----ADLRSEQAAPQQS 370
>SB_23541| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 957
Score = 31.5 bits (68), Expect = 0.72
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -1
Query: 312 QMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPKTAPKSA 196
+M E Q + P Q AQG Q GK H EP P +A
Sbjct: 749 EMEEHQGSTSAQPDEQLAQGLAQEPGKQHQEPARTPVAA 787
>SB_6427| Best HMM Match : RBM1CTR (HMM E-Value=0.42)
Length = 315
Score = 31.5 bits (68), Expect = 0.72
Identities = 19/46 (41%), Positives = 22/46 (47%)
Frame = -1
Query: 333 NKRCKIEQMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPKTAPKSA 196
N RC+ E M E Q + P Q AQ Q GK H EP P +A
Sbjct: 108 NARCQRE-MEEPQGSTSAQPDDQLAQELAQEPGKQHQEPARTPVAA 152
>SB_39979| Best HMM Match : RVT_1 (HMM E-Value=4.6e-12)
Length = 792
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = -1
Query: 459 SRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLL-PDNKRCKIEQMFELQH 292
+++ ISE L+ ++F L AR K WT +GK+ + D++ I + +L H
Sbjct: 123 NKIYISESLSPGNRELFKAALSARHDLKFKYIWTQNGKVFLRKNNDSQAVLISKSQDLLH 182
Query: 291 LKTK 280
LK +
Sbjct: 183 LKQR 186
>SB_37641| Best HMM Match : WXG100 (HMM E-Value=2)
Length = 166
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -1
Query: 717 LDRHEMASRRKVLLFHGIPESDATDPATAIVGILTNQMKVAGCTEEDLTACYRL 556
LD + RR L F GIP+ D DP + I T + E+D++ +RL
Sbjct: 106 LDEQQQYGRRDCLEFVGIPKVDNDDPVKLV--IETAALAGVEVKEDDISIAHRL 157
>SB_57452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = -1
Query: 459 SRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLL-PDNKRCKIEQMFELQH 292
+++ ISE L+ ++F L AR K WT +GK+ + D++ I + +L H
Sbjct: 27 NKIYISESLSPGNRELFKAELSARHDLKFKYIWTQNGKVFLRKNNDSQAVLISKSQDLLH 86
Query: 291 LKTK 280
LK +
Sbjct: 87 LKQR 90
>SB_13857| Best HMM Match : Thymosin (HMM E-Value=1.8)
Length = 144
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = -1
Query: 696 SRRKVLLFHGIPESDATDPATAIVGILTNQMKVAG--CTEEDLTACYRLGS---NTNKPR 532
S R L+F+ + E DP + +L K ++ +RLG N +KPR
Sbjct: 69 SMRNNLIFYNMNECAEEDPFAVVQKVLVTNFKFKDEEVNAIEIERAHRLGRRDPNKDKPR 128
Query: 531 PILVRFL 511
P++ R L
Sbjct: 129 PLIARLL 135
>SB_936| Best HMM Match : DUF1127 (HMM E-Value=3.2)
Length = 280
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = -1
Query: 459 SRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLL-PDNKRCKIEQMFELQH 292
+++ ISE L+ ++F L AR K WT +GK+ + D++ I + +L H
Sbjct: 201 NKIYISESLSPGNRELFKAALSARHDLKFKYIWTQNGKVFLRKNNDSQAVLISKSQDLLH 260
Query: 291 LKTK 280
LK +
Sbjct: 261 LKQR 264
>SB_48988| Best HMM Match : DUF1127 (HMM E-Value=1.5)
Length = 270
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = -1
Query: 459 SRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLL-PDNKRCKIEQMFELQH 292
+++ ISE L+ ++F L AR K WT +GK+ + D + I + +L H
Sbjct: 191 NKIYISESLSPGNRELFKAALSARHDLKFKYIWTQNGKVFLRKNNDGQAVLISKSQDLLH 250
Query: 291 LKTK 280
LK +
Sbjct: 251 LKQR 254
>SB_5507| Best HMM Match : TP2 (HMM E-Value=4)
Length = 524
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -1
Query: 327 RCKIEQMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPKTAPKSA 196
RC+ E M E Q + P Q AQ Q GK H EP P +A
Sbjct: 176 RCQRE-MGEPQGSTSARPDKQLAQELAQEPGKQHQEPAHTPVAA 218
>SB_2704| Best HMM Match : TP2 (HMM E-Value=6.9)
Length = 351
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -1
Query: 312 QMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPKTAPKSAA 193
+M E Q + P Q AQ Q GK H EP P +AA
Sbjct: 178 EMEEPQGSTSAQPDEQFAQELAQEPGKQHQEPARTPVAAA 217
>SB_1755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = -1
Query: 696 SRRKVLLFHGIPESDATDPATAIVGIL-TN-QMKVAGCTEEDLTACYRLG---SNTNKPR 532
S R L+F+ + E DP + +L TN + K ++ +RLG N +KPR
Sbjct: 82 SMRNNLIFYNVNECAEEDPFAVVQKVLVTNFKFKDEEVKAIEIGQAHRLGRRDPNKDKPR 141
Query: 531 PILVRFL 511
P++ R L
Sbjct: 142 PLIARSL 148
>SB_5898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -1
Query: 312 QMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPKTAPKSA 196
QM E Q + P Q AQ Q GK H EP P +A
Sbjct: 739 QMGEPQGSTSAQPDEQLAQELAQEPGKQHQEPARTPVAA 777
>SB_22154| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 68
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 219 VRHEISQMTEELLALFEPRETWFSDAEVQTSVQSYSVYYPGEGRLFSHLL 368
V + Q T ++++ R + Q V +S YP EGR F HL+
Sbjct: 4 VNDQQKQATVHIISMRRIRSWIYESRHRQIKVSLFSKGYPEEGRNFDHLI 53
>SB_18971| Best HMM Match : PWP2 (HMM E-Value=4)
Length = 400
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -1
Query: 585 EEDLTACYRLGS-NTNKPRPILVRFLSLRRCNEVWKNKTLLKGSRV 451
EED++ + L S N N P I+V+F+ N + N+ L G +V
Sbjct: 59 EEDISTSHPLPSYNPNAPPKIIVKFVRRDTRNAFYSNRRKLAGMKV 104
>SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)
Length = 482
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -1
Query: 312 QMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPKTAPKSAAEREI 181
+M E Q + P Q AQ Q GK H EP P +A I
Sbjct: 71 EMEEPQGSTSAQPDEQLAQELAQEPGKRHQEPARTPVAAGPARI 114
>SB_59010| Best HMM Match : rve (HMM E-Value=0.0052)
Length = 935
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -1
Query: 312 QMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPKTAPKSA 196
+M E Q + P Q AQ Q GK H EP P +A
Sbjct: 554 EMGEPQGSTSAQPDEQLAQELAQEPGKQHQEPARTPVAA 592
>SB_39791| Best HMM Match : RVT_1 (HMM E-Value=0.083)
Length = 497
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = -1
Query: 459 SRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLL-PDNKRCKIEQMFELQH 292
+++ ISE L+ ++F L AR K WT +GK+ + D++ I + + H
Sbjct: 150 NKIYISESLSPGNRELFKAALSARHDLKFKYIWTQNGKVFLRKNKDSQAVLISKSQDSLH 209
Query: 291 LKTK 280
LK +
Sbjct: 210 LKQR 213
>SB_25470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 28.3 bits (60), Expect = 6.7
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 6/104 (5%)
Frame = -1
Query: 705 EMASRRKVLLFHGIPESDATD---PATAIVGILTNQMKVAGCTEEDLT--ACYRLGS-NT 544
E SRR L F GIPE A+ + +K D++ +R G+ +
Sbjct: 126 ESFSRRNNLRFFGIPEGTNESWNGTEEAVRDFIHKNLKAGPKQAGDVSFERVHRTGTKDK 185
Query: 543 NKPRPILVRFLSLRRCNEVWKNKTLLKGSRVIISEFLTKSRHDV 412
+ PRPI+ +F + EV L G+ I+E K DV
Sbjct: 186 SSPRPIIAKFSFFKDKEEVRSLAKNLAGTSFGIAEDYPKEIADV 229
>SB_27943| Best HMM Match : Pox_A32 (HMM E-Value=0.047)
Length = 983
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -1
Query: 312 QMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPKTAPKSA 196
+M E Q + P Q AQ Q GK H EP P +A
Sbjct: 682 RMEEPQGSTSARPDEQPAQELAQEPGKQHQEPARTPVAA 720
>SB_9870| Best HMM Match : GspM (HMM E-Value=1.9)
Length = 522
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -1
Query: 312 QMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPKTAPKSA 196
+M E Q + P Q AQ Q GK H EP P +A
Sbjct: 138 RMEEPQGSTSARPDEQPAQELAQEPGKQHQEPARTPVAA 176
>SB_4563| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1473
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -1
Query: 312 QMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPKTAPKSA 196
+M E Q + P Q AQ Q GK H EP P +A
Sbjct: 985 EMGEPQGSTSAQPDEQLAQELAQEPGKQHQEPARTPVAA 1023
>SB_48252| Best HMM Match : Ribosomal_60s (HMM E-Value=1.1)
Length = 937
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 312 QMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPKTAPKSAAER 187
QM E Q + P+ A+ Q++ + H EP P + AER
Sbjct: 641 QMEEPQGSTSAQPAGTSAEPDKQAADEHHQEPARTPSALAER 682
>SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44)
Length = 603
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -2
Query: 272 RLKKRKELLSHLGNLMTNPRRHQNQRQSEKSARGRLVESS 153
RL++++ L HL RRHQ Q+Q ++ + + +E S
Sbjct: 292 RLQQQQLLQQHLQRQQQQQRRHQQQQQQQQLHQQQRLEQS 331
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,859,958
Number of Sequences: 59808
Number of extensions: 482054
Number of successful extensions: 1646
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 1529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1641
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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