Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0560
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ...    30   1.9  
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ...    30   1.9  
Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.    28   5.9  
U41034-2|AAA82379.1|  915|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF022981-2|AAG24200.1|  236|Caenorhabditis elegans Hypothetical ...    28   5.9  
U00037-4|AAU20840.1|  454|Caenorhabditis elegans Prolyl trna syn...    28   7.8  
U00037-3|AAA50660.1|  581|Caenorhabditis elegans Prolyl trna syn...    28   7.8  

>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
            chromosome bindingprotein protein 6, isoform a protein.
          Length = 1724

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = -1

Query: 477  KTLLKGSRVIISEFLTKSRHDVFLEARSHFGVKR-CWTTDGKIIVLLPDNKRCKIEQMFE 301
            KT++  S + + EFL + R    L+ +    ++  C      I  +L DN++ K E MFE
Sbjct: 1294 KTIVP-SILSLREFLNQHRSP--LQRKCLLAIRMICIEHKNDIDEILQDNRQLKDEMMFE 1350

Query: 300  LQHLKTKFPSAQK 262
            LQ +K +   A +
Sbjct: 1351 LQRVKQRTEEANR 1363


>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
            chromosome bindingprotein protein 6, isoform b protein.
          Length = 1758

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = -1

Query: 477  KTLLKGSRVIISEFLTKSRHDVFLEARSHFGVKR-CWTTDGKIIVLLPDNKRCKIEQMFE 301
            KT++  S + + EFL + R    L+ +    ++  C      I  +L DN++ K E MFE
Sbjct: 1294 KTIVP-SILSLREFLNQHRSP--LQRKCLLAIRMICIEHKNDIDEILQDNRQLKDEMMFE 1350

Query: 300  LQHLKTKFPSAQK 262
            LQ +K +   A +
Sbjct: 1351 LQRVKQRTEEANR 1363


>Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical
           protein E02H4.1 protein.
          Length = 664

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -1

Query: 375 CWTTDGKIIVLLPDNKRCKIEQMFELQHLKTKFPSAQKAQGAPQSSGKSHDE 220
           C TT+G  +    + K CK  Q  +     T + +A+   G+ Q+S  +H +
Sbjct: 514 CLTTEGAKLSTKENQKHCKCIQPCQQDQYTTTYSAAKWPSGSIQTSCDNHSK 565


>U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.
          Length = 664

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -1

Query: 375 CWTTDGKIIVLLPDNKRCKIEQMFELQHLKTKFPSAQKAQGAPQSSGKSHDE 220
           C TT+G  +    + K CK  Q  +     T + +A+   G+ Q+S  +H +
Sbjct: 514 CLTTEGAKLSTKENQKHCKCIQPCQQDQYTTTYSAAKWPSGSIQTSCDNHSK 565


>U41034-2|AAA82379.1|  915|Caenorhabditis elegans Hypothetical
           protein M02D8.3 protein.
          Length = 915

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 666 IPESDATDPATAIVGILTNQMKVAGCTEEDLTACYRL 556
           +P  +  D A  +  IL ++   +  TEE+L A YRL
Sbjct: 769 VPREELIDLARELFAILLDEWATSFVTEEELEALYRL 805


>AF022981-2|AAG24200.1|  236|Caenorhabditis elegans Hypothetical
           protein W03F9.2a protein.
          Length = 236

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = -1

Query: 363 DGKIIVLLPDNKRCKIEQMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPKTAPKSAAE 190
           D  ++ L    ++C I  +     LK K P++   +  P S G+S   P+ AP+   E
Sbjct: 13  DDYLVTLSSPQRQCTIRVVQPASALKRKLPTSSVPEFNPDSYGES--IPENAPRPVCE 68


>U00037-4|AAU20840.1|  454|Caenorhabditis elegans Prolyl trna
           synthetase protein1, isoform b protein.
          Length = 454

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 261 AQGAPQSSGKSHDEPKTAPKSAAEREIGKRTT 166
           A  A QS  K  ++PK  PK   +++ GK+ T
Sbjct: 56  APNARQSKPKKEEKPKQQPKQQEKKQDGKKQT 87


>U00037-3|AAA50660.1|  581|Caenorhabditis elegans Prolyl trna
           synthetase protein1, isoform a protein.
          Length = 581

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 261 AQGAPQSSGKSHDEPKTAPKSAAEREIGKRTT 166
           A  A QS  K  ++PK  PK   +++ GK+ T
Sbjct: 56  APNARQSKPKKEEKPKQQPKQQEKKQDGKKQT 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,114,061
Number of Sequences: 27780
Number of extensions: 368494
Number of successful extensions: 970
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)