Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0560
(723 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g79190.1 68414.m09233 expressed protein 32 0.44
At5g54620.1 68418.m06801 ankyrin repeat family protein contains ... 29 3.1
At5g24040.1 68418.m02824 F-box family protein similar to unknown... 29 3.1
At2g31600.2 68415.m03861 expressed protein 29 3.1
At2g31600.1 68415.m03860 expressed protein 29 3.1
At3g18290.1 68416.m02326 zinc finger protein-related weak alignm... 29 4.1
At4g38990.1 68417.m05524 glycosyl hydrolase family 9 protein end... 28 5.5
At1g33880.1 68414.m04200 avirulence-responsive family protein / ... 28 7.2
At5g35040.1 68418.m04139 hypothetical protein includes At2g24900... 27 9.5
At4g31160.1 68417.m04423 transducin family protein / WD-40 repea... 27 9.5
At4g11400.1 68417.m01838 ARID/BRIGHT DNA-binding domain-containi... 27 9.5
At3g51490.1 68416.m05639 sugar transporter family protein simila... 27 9.5
>At1g79190.1 68414.m09233 expressed protein
Length = 1274
Score = 31.9 bits (69), Expect = 0.44
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +3
Query: 114 LVLHL*ISSRYRHTTFDESSSCRFLALPLILVPSWVRHEIS-QMTEE-LLALFEPRETWF 287
++L L S RYR T +SSC A PL+ + V +S ++ EE ++AL + E +
Sbjct: 935 ILLELNRSKRYRRTVGSIASSCLIAATPLLASSNQVSCLVSLEIIEEGVVALAKVEEAYR 994
Query: 288 SDAEVQTSVQ 317
++ E + +++
Sbjct: 995 AETETKETIE 1004
>At5g54620.1 68418.m06801 ankyrin repeat family protein contains
Pfam domain, PF00023: Ankyrin repeat
Length = 431
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 479 FFHTSLHRLKLRNLTNIGLGLLVLEPNR*QAVKSSSVQP 595
F HT LH T++ + L+VL+P + + S V P
Sbjct: 36 FVHTPLHEASSTGKTDLAMELMVLKPTFAKKLNSDGVSP 74
>At5g24040.1 68418.m02824 F-box family protein similar to unknown
protein (gb|AAD22308.1) ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 373
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 516 FLSLRRCNEVWKNKTLLKGSRVIISEFLTKSRHD 415
F R C++ K L+ G ++I+ E TKSR+D
Sbjct: 230 FQRSRPCDKTRKRWLLMTGDKLILVEMCTKSRYD 263
>At2g31600.2 68415.m03861 expressed protein
Length = 216
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 718 VGQA*DGVAS*GPSVSWNPGVRCHRPSNSNCG 623
+G D V G +V+ N GV+ + +NSNCG
Sbjct: 144 IGDGGDAVEGSGDNVTNNDGVKSDQYANSNCG 175
>At2g31600.1 68415.m03860 expressed protein
Length = 301
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 718 VGQA*DGVAS*GPSVSWNPGVRCHRPSNSNCG 623
+G D V G +V+ N GV+ + +NSNCG
Sbjct: 144 IGDGGDAVEGSGDNVTNNDGVKSDQYANSNCG 175
>At3g18290.1 68416.m02326 zinc finger protein-related weak alignment
to Pfam profiles: PF00097 Zinc finger, C3HC4 type (RING
finger) (2 copies)
Length = 1254
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 291 DAEVQTSVQSYSVYYPGEGRLFSHL--LSSSA*RRNES 398
D V+ Q+YS+ + GE LF HL L +SA +ES
Sbjct: 117 DIRVKNVAQTYSLEHKGESNLFDHLFELLNSATETDES 154
>At4g38990.1 68417.m05524 glycosyl hydrolase family 9 protein
endo-1,4-beta-glucanase precursor - Fragariax ananassa,
PID:g3549291 A short intron was annotated between exons
4 and 5 to circumvent a frameshift. The frameshift may
be artificial due to a sequencing error, or
alternatively is genuine suggesting a truncated protein
or pseudogene.
Length = 495
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/56 (23%), Positives = 28/56 (50%)
Frame = +3
Query: 177 CRFLALPLILVPSWVRHEISQMTEELLALFEPRETWFSDAEVQTSVQSYSVYYPGE 344
C F+ + LIL+P+ + H+ S + + FE + + + E + + + S G+
Sbjct: 6 CSFIVILLILLPTTISHDYSDALTKSILFFEGQRSGYLPREQRMTWRHNSALNDGK 61
>At1g33880.1 68414.m04200 avirulence-responsive family protein /
avirulence induced gene (AIG1) family protein similar to
AIG1 protein SP:P54120 [Arabidopsis thaliana]; contains
Pfam PF04548: AIG1 family;
Length = 234
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 328 FIIREKDDYFPICCPAALNAEMR 396
F +E +DYFP CCP L +R
Sbjct: 150 FEAKEFEDYFPECCPEFLMRVLR 172
>At5g35040.1 68418.m04139 hypothetical protein includes At2g24900,
At5g35040, At3g30500, At4g07690
Length = 236
Score = 27.5 bits (58), Expect = 9.5
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Frame = -1
Query: 525 LVRFLSLRRCNEVWKNKTLLKGSRVIISEFLTKSRHDVFLEARSHFGVKRCWTTDGKIIV 346
++ F++ N + +L + + H L R R W DG+I
Sbjct: 93 MIEFMNATELNHSDPRENVLFNRFTPFDYIIEDTAHTENLVGRMSEKYYRRWLGDGRIQT 152
Query: 345 LLPDNKRCKIEQMFELQ-HLKTKFPS 271
L D +R K E + EL L KF S
Sbjct: 153 YLRDKERLKCEALGELAVDLHRKFRS 178
>At4g31160.1 68417.m04423 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
KIAA0800 protein, Homo sapiens GI:3882321 EMBL:AB018343
Length = 1846
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 435 LTKSRHDVFLEARSHFGVKRCWTTDGKIIVLLPDN 331
L +S+ +FLE HF R GK+ +L+ +N
Sbjct: 79 LLESQESLFLEENGHFSNARGSHNSGKLCILIREN 113
>At4g11400.1 68417.m01838 ARID/BRIGHT DNA-binding domain-containing
protein / ELM2 domain-containing protein / Myb-like
DNA-binding domain-containing protein similar to
BRG1-binding protein ELD/OSA1 [Homo sapiens]
GI:18568414; contains Pfam profiles PF01388: ARID/BRIGHT
DNA binding domain, PF01448: ELM2 domain, PF00249:
Myb-like DNA-binding domain
Length = 573
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/29 (48%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Frame = -2
Query: 281 SFPRLKKRKELLSHLGNL-MTNPRRHQNQ 198
+FP+ KKR+EL+S+ N+ + N RR+QN+
Sbjct: 501 NFPK-KKREELVSYYFNVFLINRRRYQNR 528
>At3g51490.1 68416.m05639 sugar transporter family protein similar
to D-xylose proton-symporter [Lactobacillus brevis]
GI:2895856; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 729
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 445 NDDPRTLQECLVLPHFIASPQTQEPD*YRPRLIG 546
N+D E L P + SPQT EPD Y R +G
Sbjct: 347 NEDSSDQDENLNSP--LLSPQTTEPDDYHQRTVG 378
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,166,360
Number of Sequences: 28952
Number of extensions: 345770
Number of successful extensions: 910
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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