Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0559
         (709 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q24HY5 Cluster: Myb-like DNA-binding domain containing ...    35   2.3  
UniRef50_Q9XUR5 Cluster: Putative uncharacterized protein srw-20...    33   6.9  
UniRef50_Q228Z0 Cluster: Putative uncharacterized protein; n=1; ...    33   6.9  

>UniRef50_Q24HY5 Cluster: Myb-like DNA-binding domain containing
           protein; n=1; Tetrahymena thermophila SB210|Rep:
           Myb-like DNA-binding domain containing protein -
           Tetrahymena thermophila SB210
          Length = 1033

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = -2

Query: 375 LGYSYSRALSLIS*KLTFTITALRFTKIHQSLVVTPYRLSRKPHVHIFS*RQED 214
           LG+ Y++   +     + T T  RF+ I+ +L + P   S KP+++IF   QED
Sbjct: 176 LGFCYTQIQVIYLVLNSVTTTKRRFSSINSNLSIKPVTFSLKPYLNIFQNIQED 229


>UniRef50_Q9XUR5 Cluster: Putative uncharacterized protein srw-20;
           n=1; Caenorhabditis elegans|Rep: Putative
           uncharacterized protein srw-20 - Caenorhabditis elegans
          Length = 345

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -3

Query: 278 WLHLIVSLVNLMCIFFP--NVKKTISTRTICFYVIHNCLCFVTFLFIYKICMEYEIKILR 105
           WL +++S V  + + FP  N  + I+ +T+   +      FV F+   ++ M Y IK L 
Sbjct: 112 WLAVVMSAVRTLSVLFPMHNRIQKINEKTVSVRISIAVFIFVMFVDFTELAMTYRIKWLP 171

Query: 104 STL 96
           S L
Sbjct: 172 SIL 174


>UniRef50_Q228Z0 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 2847

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 17/55 (30%), Positives = 33/55 (60%)
 Frame = -3

Query: 266  IVSLVNLMCIFFPNVKKTISTRTICFYVIHNCLCFVTFLFIYKICMEYEIKILRS 102
            I+ +  + CI  P  K+ ++   +C + +   + FV+FLF YK  +EY +K+L++
Sbjct: 2473 IIKIKRIFCISLPFNKQDVTDSILCIFTLIYLISFVSFLF-YK--LEY-LKVLQN 2523


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 597,524,858
Number of Sequences: 1657284
Number of extensions: 10675876
Number of successful extensions: 22465
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22453
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)