Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0559
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    27   2.6  
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    27   2.6  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   6.1  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   8.0  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    25   8.0  

>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 73  IATCTEVLRVERNIFISYSIQILYINKNVTKQR 171
           IATCT +  +E  I    SI ++ I ++ T+ R
Sbjct: 470 IATCTMMFGLETGIIFGLSITVMQIIRHSTRSR 502


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = +1

Query: 73  IATCTEVLRVERNIF----ISYSIQILYINKNVTKQRQLCIT*KHMVRVEIVFLTLGKNM 240
           IA C  +LR  + I       YSI  L + K  T  + L I  K+M R     LT+ K M
Sbjct: 137 IAQCLHILRGTKFIIDWHNFGYSILALKLGKQHTFVKLLKIYEKYMARGAYAHLTVSKRM 196


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 293 FINHWWLHLIVSLVNLMCIFFPNVKKTISTRTICF 189
           F NHW L  ++++  L+      V+ T+  +TI F
Sbjct: 243 FFNHWKLVALITITKLIQDVLAFVQPTLIQKTILF 277


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 500  ISRTKSRKHALLTGFFQCLNSYCL 429
            I   KSRKH LLT  F+ L ++ L
Sbjct: 3495 IKHLKSRKHLLLTETFKTLKAFGL 3518


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 466 SNACFLDLVRDMKFLEIV*YFFE*FNALNS 555
           SN  F  L+RD+KF   V  FF   N LN+
Sbjct: 242 SNRSFYMLMRDIKFFPGVPPFFTFINLLNN 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,652,733
Number of Sequences: 5004
Number of extensions: 51219
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)