Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0559
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1171| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.9  
SB_30844| Best HMM Match : zf-C2H2 (HMM E-Value=0.0028)                28   6.5  

>SB_1171| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1415

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 9/30 (30%), Positives = 21/30 (70%)
 Frame = -1

Query: 175 IVSVLLHFYLYIKFVWNMK*KYYAQLSVLQ 86
           +V+VL+H++L + F+W +   Y+  L+ ++
Sbjct: 905 VVAVLIHYFLLVAFMWMLIEAYFMYLAFVK 934


>SB_30844| Best HMM Match : zf-C2H2 (HMM E-Value=0.0028)
          Length = 401

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +3

Query: 495 RYEVFRDSLIFFRIV*CLE*FYTFINRSCVIDYSLINRYGSELTYLNDCH 644
           ++EV + SL+F  I+   + +   INR+C   +SLI  Y    ++   CH
Sbjct: 315 KHEVSQSSLVF-EILQSWKYYIPLINRNCPYPFSLIFVYRGFDSHYKTCH 363


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,633,997
Number of Sequences: 59808
Number of extensions: 341177
Number of successful extensions: 780
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)