Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0559
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81585-4|CAB04687.1|  345|Caenorhabditis elegans Hypothetical pr...    33   0.20 
AF036692-4|AAS47682.1|  318|Caenorhabditis elegans Serpentine re...    32   0.35 
AF003145-7|AAB57714.2|  352|Caenorhabditis elegans Serpentine re...    29   3.3  
AF125442-4|AAD12794.1|  317|Caenorhabditis elegans Serpentine re...    29   4.3  
Z81119-6|CAB03337.2|  401|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z81585-4|CAB04687.1|  345|Caenorhabditis elegans Hypothetical
           protein T05E12.4 protein.
          Length = 345

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -3

Query: 278 WLHLIVSLVNLMCIFFP--NVKKTISTRTICFYVIHNCLCFVTFLFIYKICMEYEIKILR 105
           WL +++S V  + + FP  N  + I+ +T+   +      FV F+   ++ M Y IK L 
Sbjct: 112 WLAVVMSAVRTLSVLFPMHNRIQKINEKTVSVRISIAVFIFVMFVDFTELAMTYRIKWLP 171

Query: 104 STL 96
           S L
Sbjct: 172 SIL 174


>AF036692-4|AAS47682.1|  318|Caenorhabditis elegans Serpentine
           receptor, class x protein14 protein.
          Length = 318

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = -3

Query: 278 WLHLIVSLVNLMCIFFPNVKKTISTRTICFYVIHNCLCFVTFLFIYKI 135
           W H+++SL +L+ +  P+  ++I +R  C +    CL F+  L  ++I
Sbjct: 124 WSHILLSLCSLLSVHIPSRNQSIFSRQNCIF----CLIFIFSLSFFEI 167


>AF003145-7|AAB57714.2|  352|Caenorhabditis elegans Serpentine
           receptor, class z protein4 protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -3

Query: 275 LHLIVSLVNLMCIFFPNVKKTISTRTICFYVIHNCLCFV 159
           L  I++L   M +FFPN KK IS     F    N L  V
Sbjct: 117 LLFILALRLFMILFFPNFKKVISINQKSFQATRNLLYIV 155


>AF125442-4|AAD12794.1|  317|Caenorhabditis elegans Serpentine
           receptor, class v protein21 protein.
          Length = 317

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 209 STRTICFYVIHNCL-CFVTFLFIYKI 135
           S+RT  FYV+ +CL C + + FI KI
Sbjct: 188 SSRTAFFYVLFSCLICLICYGFILKI 213


>Z81119-6|CAB03337.2|  401|Caenorhabditis elegans Hypothetical
           protein T10H4.8 protein.
          Length = 401

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 20/94 (21%)
 Frame = -3

Query: 278 WLHLIVSLVNLMCIFFPN---VKKTISTRTICFYVI---------HNCLCFVTFLFIY-- 141
           WL ++++L+  + +FFP    ++K    +   F ++         H+C  F   L  Y  
Sbjct: 132 WLAMLMALIRTLSVFFPMSNWIQKLSKPKNAIFMIVVVFTFWTIWHSCQFFAMTLRRYRD 191

Query: 140 ---KICMEYE--IKILRSTLSTSVHVA-IYPHRR 57
              K C  YE  +    S L  SV+V+ IY +R+
Sbjct: 192 VLDKSCYNYEEHLNHTNSVLVVSVYVSNIYVNRK 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,236,539
Number of Sequences: 27780
Number of extensions: 274708
Number of successful extensions: 639
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)