Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0558
(775 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 33 0.060
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 32 0.10
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 32 0.10
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 30 0.32
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.74
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 29 0.98
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 27 2.3
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 27 2.3
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 27 2.3
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 27 3.0
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 27 3.9
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 27 3.9
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 27 3.9
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.9
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 5.2
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 5.2
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s... 26 6.9
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 26 6.9
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 6.9
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 26 6.9
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.1
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 25 9.1
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 25 9.1
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 32.7 bits (71), Expect = 0.060
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 1/121 (0%)
Frame = +1
Query: 397 KSSEIPDAEAKSADI-KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAII 573
K S+ P+ + + KVEEP+ + ++ + + TV + +E+ P A S
Sbjct: 446 KPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTF 505
Query: 574 PNMVKKIDLAPNVESDAAAVPEIKTPEAADAPKLADNPVDEDKPADISPDAPKAEAKSAD 753
VKK P+ E E P+A AP V+E +P +S D A +
Sbjct: 506 SEDVKK---EPSEEKKLEVSDE--APKA--APLAESKKVEEKEPFYVSKDKKDISAVNLA 558
Query: 754 D 756
D
Sbjct: 559 D 559
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 31.9 bits (69), Expect = 0.10
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +1
Query: 469 EDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVPEIKT 648
E+S + +E+SK KP+ TD N K+I++A S A P+ T
Sbjct: 33 EESLPSILGEKSEVSKPFKPAVTDPS----------NAKKEINMAIESPSKKATSPKKAT 82
Query: 649 PEAADAPKLADNPVD-EDKPADISPDAPKA 735
P AA AP A + VD + A ++P+ KA
Sbjct: 83 P-AAVAPVEATSAVDTSEAVASMTPNKRKA 111
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 31.9 bits (69), Expect = 0.10
Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 2/125 (1%)
Frame = +1
Query: 403 SEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNM 582
S P E+ + +VE P+ E + +V E E K AT D +P
Sbjct: 447 SSSPTKESTTRKSEVEPPSPSKEIKSSHF--SVPEFKFEPKTEAT-----TDKKLNVPKF 499
Query: 583 VKKIDLAPNVESDAAAVPEIKTPEAADAP-KLADNP-VDEDKPADISPDAPKAEAKSADD 756
K +V+++ E K A P K + P + E+KP+ S +PK E D
Sbjct: 500 EFKPTATADVQTNRLKENEPKPTFFAQLPSKTQETPSITENKPSFFSQLSPKREETEKKD 559
Query: 757 SATTA 771
+A +A
Sbjct: 560 NAPSA 564
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 30.3 bits (65), Expect = 0.32
Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Frame = +1
Query: 442 KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESD 621
+VEE A+ S E S KPSA AE D I V I L +
Sbjct: 289 RVEEKLAKRTQSFRREDNANRERSTSRKPSADKAE-KTDKTDAIAEKVSDIRLGDGEKKS 347
Query: 622 AAAVPEI---KTPEAADAPKLADNPVDEDK 702
+ E+ KTP DAP +E++
Sbjct: 348 SETDSEVAATKTPATEDAPATNAGEAEEEE 377
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.1 bits (62), Expect = 0.74
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 394 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 564
AK S D K + K + A+ PE SK V+ KEE S +++E S+ +
Sbjct: 41 AKQSSKTDVSPKKSK-KEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSES 96
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 28.7 bits (61), Expect = 0.98
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 2/124 (1%)
Frame = +1
Query: 403 SEIPDAEAKSADIKVEEPAA-QPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPN 579
S IP E +I VEE +P EV+ T A +E+ P D+E +A +
Sbjct: 142 SPIPSPETIHKNIDVEEKETIEPTTPVKEVETT-AHAEEEKGPLTPDSEYAA--RQLTEE 198
Query: 580 MVKKIDLAPNVESDAAAVPEIKTPEAADAPKLADNPVDEDKPADISPDAPKA-EAKSADD 756
+ K V+ V + D + V KP +++ D ++ E K +
Sbjct: 199 LANKSSQEEGVDKQLRVVEATEKEHEEDG---NEENVTVTKPVEVATDQVESKEVKKKEV 255
Query: 757 SATT 768
S TT
Sbjct: 256 SETT 259
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/72 (23%), Positives = 30/72 (41%)
Frame = +1
Query: 481 TEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVPEIKTPEAA 660
T+ A+ E ++ S+ + SA A I N+ DL PN + + + +
Sbjct: 42 TDKNASNQEQGTKKLESSVGEQESATKRAKIENLKDNQDLIPNNDVNGIHINNSAVADTK 101
Query: 661 DAPKLADNPVDE 696
PK+ D D+
Sbjct: 102 HKPKIGDIAADD 113
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 27.5 bits (58), Expect = 2.3
Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 1/100 (1%)
Frame = +1
Query: 475 SKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVPEI-KTP 651
+K+E A +A EE S + A K + V SDA V + KT
Sbjct: 252 AKSESAAGLAAYELEESSSLPAIVHGNNKNARKNIATLKSKIRDIVNSDANVVEQSEKTT 311
Query: 652 EAADAPKLADNPVDEDKPADISPDAPKAEAKSADDSATTA 771
E AD + +DE KPAD + + S S+ T+
Sbjct: 312 EDADEEPETEENLDEFKPADGADNEDSKSLVSHISSSNTS 351
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 449 KNQLLSLKIQKLKYKLPSLKFQKKKNL 529
KN LLS KI + Y+ S+++QK KN+
Sbjct: 40 KNGLLSPKITQRFYQNSSIQYQKDKNI 66
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 27.1 bits (57), Expect = 3.0
Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 5/123 (4%)
Frame = +1
Query: 412 PDAEAKSADIKVEEPAAQPEDSKTEVQATVAEI-----SKEEKPSATDAEGSADSAAIIP 576
P +AK+ E Q + T + A + + E A A S +I P
Sbjct: 38 PQRKAKTPSNHATEELQQSSTNSTTLPTQEAAVETNASASHETSFALPTTSPAASLSISP 97
Query: 577 NMVKKIDLAPNVESDAAAVPEIKTPEAADAPKLADNPVDEDKPADISPDAPKAEAKSADD 756
+ PNVE+D ++ ++P + P I+ + P + +
Sbjct: 98 TKSAAVSSEPNVEADVKSLSSTPAAPQLNSPSHSYEPTTFPSTTSITENLPTIDPTRSTR 157
Query: 757 SAT 765
S++
Sbjct: 158 SSS 160
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +1
Query: 502 AEISKEEKPSATDAEGSADSAAIIPNMVKKI--DLAPNVESDAAAVPEIKTPEA 657
A K+ +PS + +A + PN VK + D+ P + +I PEA
Sbjct: 556 ASALKDREPSEKELPSTAKETSFAPNAVKTLDEDITPQSSNWQTVAKQIIFPEA 609
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.6 bits (56), Expect = 3.9
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Frame = +1
Query: 400 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGS----ADSAA 567
SS DA AKS + EPA +P + + ++T + EK + TD + A
Sbjct: 898 SSSKSDA-AKSIKPQKPEPALKPVEGTADPKSTKRNHQETEKTADTDVSSTEPVKRQKTA 956
Query: 568 IIPNMVKKIDLAPNVESDAAAVPEIKTPEAADAPKLADNPVDE 696
+ + V + ++ +V + P++ PK + D+
Sbjct: 957 DVNDDVGEEEVKQSVSEQVDSAQLTSEPKSESLPKSPEEKSDD 999
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 26.6 bits (56), Expect = 3.9
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +1
Query: 571 IPNMVKKIDLAPNVESDAAAVPEIKTPEAADAPKLADNPVDEDKPADISPDAPKAEAKSA 750
+ VK + L P V + + E+K E A +LA +K A APK+ +K
Sbjct: 9 VTQAVKALVLDP-VTGEQVSKTELKKREKQRARELAKAKKQAEKAASAPVAAPKSSSKKE 67
Query: 751 DD 756
+D
Sbjct: 68 ED 69
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 26.6 bits (56), Expect = 3.9
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = +1
Query: 490 QATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVPEIKTPEAADAP 669
Q T+A PS +A S +P I+ N+ +A ++PE P A +
Sbjct: 362 QDTLASNHVPSAPSNESVSSAAPSKIPVPEEAS-INEHSNITDEAVSLPEPVYPNAPTSA 420
Query: 670 KLADNPV--DEDKPAD 711
NP DE +P +
Sbjct: 421 VSVHNPTISDEAEPTE 436
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 333 VFWGYIVLFGLWYSGYLVVTNW 268
VFW +IVL GL+Y Y V ++
Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +1
Query: 415 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADS 561
D + I E PA + K + + + S E+PS T EG+ D+
Sbjct: 601 DEYQRQLHIDFENPAVSASE-KLSTEEIIPQESNFEEPSTTKKEGNVDT 648
>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 279
Score = 25.8 bits (54), Expect = 6.9
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Frame = +1
Query: 463 QPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKID-------LAPNVESD 621
+PED++ V E+ A+ A +IP +KK + PN+E
Sbjct: 118 KPEDNQDPVIDIAHEVHYANVRLLAHAKTDAGEPVLIPVKLKKHSSTNLRSIIRPNIEGV 177
Query: 622 AAAVPEIKTPEAADAPKLADNPVDEDKP 705
+ P+ D PK + +D P
Sbjct: 178 QIHTIHLPRPKTEDKPKDPEGKLDTKNP 205
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/60 (25%), Positives = 33/60 (55%)
Frame = +1
Query: 451 EPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAA 630
EP +P+ S T +I+ + + + + GS A++ +++K+ID+ ++ES A+
Sbjct: 483 EPFKRPQSSSAPTILT--DINGDFEMALGASGGSRIVTAVLDSIIKRIDMDYDIESMVAS 540
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 6.9
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Frame = +1
Query: 526 PSATDAEGSADSAAIIPNMVKKIDLAPNVESDA-AAVPEIKTPEAADAPKLADNPVDEDK 702
PS + +++ P L P+ S A P P+ A L+ P D
Sbjct: 1495 PSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPPAPQHPSAAALSSAPADNSM 1554
Query: 703 PADISPDAPK 732
P SP AP+
Sbjct: 1555 PHRSSPYAPQ 1564
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 421 EAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSAD 558
++K + KVEE ++ D K + ++ KEEK TD++ +AD
Sbjct: 476 DSKETEDKVEETESKEADVKAKETDSIEVDDKEEK---TDSKETAD 518
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 418 AEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSA 555
AEA + D + P K V +VAE ++E + ++E A
Sbjct: 76 AEASTGDASTQSPETSENVVKNSVDESVAEKPEKEDLAVIESEDKA 121
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.4 bits (53), Expect = 9.1
Identities = 17/72 (23%), Positives = 29/72 (40%)
Frame = +1
Query: 514 KEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVPEIKTPEAADAPKLADNPVD 693
KE+KP+ N KK D+A + ++ +P + DA +D P+
Sbjct: 486 KEKKPTKDLQSPLPSVEEDSSNRDKKTDIADLHTDSKVGIADVLSPISPDAALQSDGPLK 545
Query: 694 EDKPADISPDAP 729
+ K + S P
Sbjct: 546 KAKEPEESSITP 557
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 9.1
Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +1
Query: 403 SEIPDAEAKSAD-IKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPN 579
+E+P K +K ++P ++P + +T+V+ A ++E +P +D + +
Sbjct: 227 AELPTEPPKQTRFLKSQQPTSEP-NVETQVEEQPALENEESEPEPSDDQF---------D 276
Query: 580 MVKKIDLAPNVE 615
+V+++D+ PNV+
Sbjct: 277 LVEEVDVLPNVD 288
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.310 0.126 0.342
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,311,315
Number of Sequences: 5004
Number of extensions: 38252
Number of successful extensions: 133
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
- SilkBase 1999-2023 -