Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0557
(723 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 301 8e-83
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 143 2e-35
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 133 2e-32
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 125 6e-30
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 112 4e-26
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 97 3e-21
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 89 6e-19
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 79 5e-16
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 77 3e-15
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 77 3e-15
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 76 4e-15
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 69 5e-13
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 68 1e-12
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 66 4e-12
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 63 4e-11
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 61 2e-10
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 59 7e-10
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 58 2e-09
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 53 4e-08
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 49 8e-07
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 39 8e-04
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 31 0.13
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 31 0.13
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 31 0.13
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 31 0.17
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 31 0.17
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 31 0.22
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 29 0.51
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch... 29 0.51
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 0.67
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 29 0.67
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 28 1.2
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 28 1.6
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.6
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 3.6
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 4.7
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 4.7
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 26 6.3
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 26 6.3
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 25 8.3
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 25 8.3
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 301 bits (738), Expect = 8e-83
Identities = 141/196 (71%), Positives = 164/196 (83%)
Frame = +3
Query: 135 EGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVV 314
E YY KI++ +L + +K+QNLRRL+AQRN LNA+VR+LR GSYVGEV+
Sbjct: 14 ENIVQYYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVI 73
Query: 315 KPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSL 494
K M K KVLVKVHPEGK+VVD+ ++DI ++ N RVALRN+SY L KILPNKVDPLVSL
Sbjct: 74 KTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSL 133
Query: 495 MMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKT 674
MMVEK+PDSTYEMVGGL+KQIKEIKEVIELPVKHPELF++LGI QPKG+LLYGPPGTGKT
Sbjct: 134 MMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKT 193
Query: 675 LLARAVAHHTECTFIR 722
LLARAVAHHT+C FIR
Sbjct: 194 LLARAVAHHTDCKFIR 209
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 143 bits (347), Expect = 2e-35
Identities = 71/144 (49%), Positives = 99/144 (68%)
Frame = +3
Query: 291 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPN 470
G +GEV+K +D ++ +VK ++VV NVD + + RV+L + T+ +ILP
Sbjct: 53 GQIIGEVLKQLDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPR 112
Query: 471 KVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 650
+VDPLV M +E D ++ VGGL++QI+E++EVIELP+K+PELF +GI PKGVLLY
Sbjct: 113 EVDPLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLY 172
Query: 651 GPPGTGKTLLARAVAHHTECTFIR 722
GPPGTGKTLLARAVA F++
Sbjct: 173 GPPGTGKTLLARAVAASLGVNFLK 196
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 133 bits (322), Expect = 2e-32
Identities = 64/133 (48%), Positives = 85/133 (63%)
Frame = +3
Query: 324 DKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMV 503
+K ++ + KFVV L + V D+ RV Y + LP K+DP V++M V
Sbjct: 111 EKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQV 170
Query: 504 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 683
E+ PD TY VGG +QI+ ++EV+ELP+ PE F LGI PKG++LYGPPGTGKTL A
Sbjct: 171 EEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKTLCA 230
Query: 684 RAVAHHTECTFIR 722
RAVA+ T+ TFIR
Sbjct: 231 RAVANRTDATFIR 243
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 125 bits (302), Expect = 6e-30
Identities = 67/187 (35%), Positives = 109/187 (58%)
Frame = +3
Query: 162 KIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 341
+I + L+ E QN RL+ Q + + G+ + E++ D ++
Sbjct: 74 RIHDHLLMEEEYVQNQERLKPQDERTQEERNRVDEIRGTPMSVGT-LEEIID--DDHAIV 130
Query: 342 VKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDS 521
PE + V + VD + + C V L +++ ++ +L + DP++++M ++K P
Sbjct: 131 STAGPE--YYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTE 188
Query: 522 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 701
+Y +GGL+ QI+EIKE +ELP+ HPEL++ +GI PKGV+LYG PGTGKTLLA+AVA+
Sbjct: 189 SYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 248
Query: 702 TECTFIR 722
T TF+R
Sbjct: 249 TSATFLR 255
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 112 bits (270), Expect = 4e-26
Identities = 55/141 (39%), Positives = 87/141 (61%)
Frame = +3
Query: 300 VGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVD 479
+G+ ++ +D+ +V +VV + +D + + VAL+ S L ILP + D
Sbjct: 58 IGQFLEAIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEAD 117
Query: 480 PLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 659
+S++ ++ PD +Y VGGLD Q +E++E +ELP+ +L+ +GI P+GVLLYGPP
Sbjct: 118 SSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPP 177
Query: 660 GTGKTLLARAVAHHTECTFIR 722
GTGKT+L +AVA+ T FIR
Sbjct: 178 GTGKTMLVKAVANSTAANFIR 198
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 96.7 bits (230), Expect = 3e-21
Identities = 48/131 (36%), Positives = 74/131 (56%)
Frame = +3
Query: 330 KKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEK 509
K ++K + L V+ ++ + + +SY + LP++ D V M V++
Sbjct: 119 KSAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDE 178
Query: 510 VPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 689
P Y +GGL KQI+E+ E I LP++ + F LG+ PKG L++GPPGTGKTLLARA
Sbjct: 179 KPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGKTLLARA 238
Query: 690 VAHHTECTFIR 722
A + TF++
Sbjct: 239 CAAQSNATFLK 249
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 89.0 bits (211), Expect = 6e-19
Identities = 35/64 (54%), Positives = 53/64 (82%)
Frame = +3
Query: 525 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 704
Y+ +GG +Q+ +I+E++ELP++HP+LF ++GI P+G+L+YGPPGTGKTL+ARAVA+ T
Sbjct: 223 YDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVANET 282
Query: 705 ECTF 716
F
Sbjct: 283 GAFF 286
Score = 81.0 bits (191), Expect = 2e-16
Identities = 47/141 (33%), Positives = 80/141 (56%)
Frame = +3
Query: 297 YVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKV 476
YVG + + + + ++ E ++DLD++ +V + V + N + L P+ +
Sbjct: 426 YVGSDLASLCSEAAMQQIR-EKMDMIDLDEDEIDAEVLDSLGVTMDNFRFALGSSNPSAL 484
Query: 477 DPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGP 656
V VE VP+ +E +GGL++ +E++E +++PV + E F G+ KGVL +GP
Sbjct: 485 RETV----VE-VPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGP 539
Query: 657 PGTGKTLLARAVAHHTECTFI 719
PGTGKTLLA+A+A+ FI
Sbjct: 540 PGTGKTLLAKAIANECSANFI 560
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 79.4 bits (187), Expect = 5e-16
Identities = 33/58 (56%), Positives = 45/58 (77%)
Frame = +3
Query: 522 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 695
T+ +GGL QI +I++++ELP ++PELF I P+GVLLYGPPGTGKT++ RAVA
Sbjct: 277 TFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPGTGKTMVMRAVA 334
Score = 70.5 bits (165), Expect = 2e-13
Identities = 31/69 (44%), Positives = 45/69 (65%)
Frame = +3
Query: 513 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 692
P+ + +GG ++ +++KE +E P+ H E F LG+ PKGVLLYGPPG KT+ A+A+
Sbjct: 543 PNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCSKTITAKAI 602
Query: 693 AHHTECTFI 719
A T FI
Sbjct: 603 ATETGLNFI 611
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 76.6 bits (180), Expect = 3e-15
Identities = 34/87 (39%), Positives = 62/87 (71%), Gaps = 3/87 (3%)
Frame = +3
Query: 468 NKVDPLV-SLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALG--IAQPKG 638
N+ + +V S +++ D +++ +GG+D+ + ++ + + P+K+PE+FD G ++ PKG
Sbjct: 68 NEYEQIVASQLVLPSEIDVSFDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHGGLLSCPKG 127
Query: 639 VLLYGPPGTGKTLLARAVAHHTECTFI 719
+LLYGPPG GKT+LA+A+A ++ TFI
Sbjct: 128 LLLYGPPGCGKTMLAKALAKQSQATFI 154
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 76.6 bits (180), Expect = 3e-15
Identities = 34/72 (47%), Positives = 48/72 (66%)
Frame = +3
Query: 504 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 683
E D + +GGLD I E+ E++ +P+KHPE++ GI P+GVLL+GPPG GKT+LA
Sbjct: 166 EPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPPGCGKTMLA 225
Query: 684 RAVAHHTECTFI 719
A+A+ FI
Sbjct: 226 NALANELGVPFI 237
Score = 73.7 bits (173), Expect = 2e-14
Identities = 36/83 (43%), Positives = 51/83 (61%)
Frame = +3
Query: 471 KVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 650
KV P VP ++ +G L E++ I P+K PEL+ ++GI+ P GVLL+
Sbjct: 473 KVQPSSKREGFATVPGVSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLW 532
Query: 651 GPPGTGKTLLARAVAHHTECTFI 719
GPPG GKTLLA+AVA+ ++ FI
Sbjct: 533 GPPGCGKTLLAKAVANESKANFI 555
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 76.2 bits (179), Expect = 4e-15
Identities = 31/58 (53%), Positives = 45/58 (77%)
Frame = +3
Query: 522 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 695
++E VGGLD I ++KE++ LP+ +PE+F + P+GVL +GPPGTGKTL+ARA+A
Sbjct: 264 SFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLMARALA 321
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 69.3 bits (162), Expect = 5e-13
Identities = 32/70 (45%), Positives = 47/70 (67%)
Frame = +3
Query: 510 VPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 689
VP ++ +GGL++ +++ ++LP++ PELF G+ GVLLYGPPGTGKTLLA+A
Sbjct: 649 VPKVNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQ-GLKPRSGVLLYGPPGTGKTLLAKA 707
Query: 690 VAHHTECTFI 719
VA F+
Sbjct: 708 VATELSLEFV 717
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 68.1 bits (159), Expect = 1e-12
Identities = 29/57 (50%), Positives = 43/57 (75%)
Frame = +3
Query: 525 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 695
+ +GGL+ I ++KE++ LP+ +PE+F L I P+GVL +GPPGTGKTL+AR +A
Sbjct: 371 FNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVLFHGPPGTGKTLMARVLA 427
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 66.5 bits (155), Expect = 4e-12
Identities = 35/78 (44%), Positives = 50/78 (64%)
Frame = +3
Query: 483 LVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPG 662
L S ++VEK P+ ++ + GL+ + +KE + LP+K P+LF G G+LLYGPPG
Sbjct: 115 LTSAILVEK-PNVRWDDIAGLENAKEALKETVLLPIKLPQLFSH-GRKPWSGILLYGPPG 172
Query: 663 TGKTLLARAVAHHTECTF 716
TGK+ LA+AVA TF
Sbjct: 173 TGKSYLAKAVATEAGSTF 190
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 62.9 bits (146), Expect = 4e-11
Identities = 31/62 (50%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Frame = +3
Query: 534 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTEC 710
+ GLD +KE + P PELF G+ +P +G+LL+GPPGTGKT+LARAVA +
Sbjct: 381 IAGLDDAKNSLKEAVIYPFLRPELFQ--GLREPVQGMLLFGPPGTGKTMLARAVATEAKA 438
Query: 711 TF 716
TF
Sbjct: 439 TF 440
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 60.9 bits (141), Expect = 2e-10
Identities = 31/73 (42%), Positives = 46/73 (63%)
Frame = +3
Query: 498 MVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 677
M E+ + + V G+D+ +E++E+++ ++ P F LG P+GVLL GPPGTGKT+
Sbjct: 257 MEERAINVRFSDVQGVDEAKEELEEIVDF-LRDPTHFTRLGGKLPRGVLLTGPPGTGKTM 315
Query: 678 LARAVAHHTECTF 716
LARAVA F
Sbjct: 316 LARAVAGEANVPF 328
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 58.8 bits (136), Expect = 7e-10
Identities = 27/62 (43%), Positives = 41/62 (66%)
Frame = +3
Query: 534 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 713
V G+D+ +EI E ++ +K+P+ ++ LG P+G +L GPPGTGKTLLA+A A
Sbjct: 298 VAGVDEAKEEIMEFVKF-LKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATAGEANVP 356
Query: 714 FI 719
F+
Sbjct: 357 FL 358
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 57.6 bits (133), Expect = 2e-09
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Frame = +3
Query: 525 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHH 701
++ + GL+ +KE + P P+LF G+ +P +G+LL+GPPGTGKT+LARAVA
Sbjct: 458 WDDISGLEFAKHSLKEAVVYPFLRPDLFQ--GLREPARGMLLFGPPGTGKTMLARAVATE 515
Query: 702 TECTF 716
+ F
Sbjct: 516 SRSVF 520
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 53.2 bits (122), Expect = 4e-08
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +3
Query: 534 VGGLDKQIKEI-KEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 692
+GGLD + I + + P + + LGI KG+LLYGPPGTGKTL+AR +
Sbjct: 271 IGGLDSEFSAIFRRAFASRLFPPGMVEKLGINHVKGILLYGPPGTGKTLIARQI 324
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 639 VLLYGPPGTGKTLLARAVAHHTECTFIR 722
VLL GP +GKT LA +A +E F++
Sbjct: 588 VLLSGPIASGKTALAATIALGSEFPFVK 615
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 48.8 bits (111), Expect = 8e-07
Identities = 21/62 (33%), Positives = 37/62 (59%)
Frame = +3
Query: 534 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 713
+ G+ + + ++++IE PVK+ ++ + P G+LL+G PG GKT LA A++
Sbjct: 608 IAGMQEAKEAVRDIIESPVKYSLIYKQCRLRLPTGILLFGYPGCGKTYLASAISSTFPVQ 667
Query: 714 FI 719
FI
Sbjct: 668 FI 669
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 38.7 bits (86), Expect = 8e-04
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +3
Query: 543 LDKQIKE-IKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 695
L+ +K+ I + + +++ + +D GI +G LLYGPPG+GKT A+A
Sbjct: 212 LESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFLYALA 263
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 31.5 bits (68), Expect = 0.13
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 516 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGI-AQPKGVLLYGPPGTGKTLLARAV 692
DS G + I +K++ K P L +L + PKG+ LYG G GKT L
Sbjct: 80 DSMPAEKGSILSWISPLKKMFSRK-KSPTLTSSLPVPGMPKGIYLYGDVGCGKTALMDLF 138
Query: 693 AHH 701
H+
Sbjct: 139 YHN 141
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 31.5 bits (68), Expect = 0.13
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +3
Query: 543 LDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 722
LD+ +K+V + ++ + G Q K + L GPPG GKT + +++A F R
Sbjct: 542 LDRDHYGLKDVKDRVLELVAVGKLRGTMQGKIMCLVGPPGVGKTSVGKSIASALNREFFR 601
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 31.5 bits (68), Expect = 0.13
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +3
Query: 618 GIAQPKGVLLYGPPGTGKTLLARAVA 695
G+ K VLL GPPG GKT A VA
Sbjct: 405 GLGLYKAVLLSGPPGIGKTTAAHLVA 430
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 31.1 bits (67), Expect = 0.17
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 642 LLYGPPGTGKTLLARAVAHH 701
L+ GPPGTGKT+ + +V +H
Sbjct: 411 LIQGPPGTGKTVTSASVVYH 430
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 31.1 bits (67), Expect = 0.17
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 639 VLLYGPPGTGKTLLARAVAHHTECTFI 719
++L+G GTGKT LAR +A T+ FI
Sbjct: 123 MILWGSAGTGKTTLARLIAVTTKSRFI 149
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 30.7 bits (66), Expect = 0.22
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 639 VLLYGPPGTGKTLLARAVAHHTE 707
+++ G PGTGKT LA VA TE
Sbjct: 11 IIICGTPGTGKTTLAEQVAETTE 33
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 29.5 bits (63), Expect = 0.51
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +3
Query: 633 KGVLLYGPPGTGKTLLARAVA 695
KGVL G GTGKT LA A+A
Sbjct: 65 KGVLFAGGAGTGKTALALAIA 85
>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 29.5 bits (63), Expect = 0.51
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +3
Query: 537 GGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP-GTGKTLLARAVAHHTE 707
G L QI+E+ I P+K + DA + YG P G L V +HTE
Sbjct: 266 GSLRTQIEELAASINFPLKKLYVIDASRRSTHSNAFFYGLPWNKGIVLFDTLVKNHTE 323
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 29.1 bits (62), Expect = 0.67
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 633 KGVLLYGPPGTGKTLLARAVAHHTECTFIR 722
K +LL G PG GKT L A+A T +R
Sbjct: 1560 KPILLEGSPGVGKTSLITALARETGHQLVR 1589
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 639 VLLYGPPGTGKTLLARAVAHHTECTFIR 722
+L+ GP +GKT + VA T F+R
Sbjct: 897 ILIQGPTSSGKTSMIEYVAKKTGHKFVR 924
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 29.1 bits (62), Expect = 0.67
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Frame = +3
Query: 480 PLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK----GVLL 647
P+ L EK E V L KQ+ E + L A G++ P L
Sbjct: 563 PVTRLKTTEKERLLNMEKV--LSKQVIGQNEAVTAVANAIRLSRA-GLSDPNQPIASFLF 619
Query: 648 YGPPGTGKTLLARAVA 695
GP GTGKTLL +A+A
Sbjct: 620 CGPSGTGKTLLTKALA 635
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +3
Query: 639 VLLYGPPGTGKTLLARAVA 695
+L YGPPGTGKT A A
Sbjct: 59 MLFYGPPGTGKTSTILACA 77
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 633 KGVLLYGPPGTGKTLLARAVA 695
+ +L+ GPP TGKT +A +A
Sbjct: 66 RAILMAGPPSTGKTAIAMGMA 86
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 513 PDSTYEMVGGLDKQIKEIKEV 575
P +YE++ GLDKQ + K+V
Sbjct: 18 PKESYELLHGLDKQYQSTKDV 38
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 406 TSLISTFLSKSTTNLPSG*TFTRTFFLSIGLTT 308
TS+IS+ S S T++PS + +FF + G T+
Sbjct: 822 TSIISSIASSSYTSIPSISSIASSFFDASGFTS 854
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 26.2 bits (55), Expect = 4.7
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Frame = +3
Query: 384 KNVDINDVTANCRVA---LRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQ 554
+++D+ + N R L N + +L + K L L + +++ D+ +
Sbjct: 1202 ESIDLQEYAPNIRFTAQKLFNATTSLREFAALK--SLRHLPLSQRILDANVTRLPSNFTD 1259
Query: 555 IKEIKEVIELPVKHPELFDALGIAQPKG-VLLYGPPGTGKT 674
K+ K + V P+ + + G L+ GPPGTGKT
Sbjct: 1260 DKKQKIMKSYGVNEPQAYAIYASSVNDGFTLIQGPPGTGKT 1300
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +3
Query: 642 LLYGPPGTGKT 674
L++GPPGTGKT
Sbjct: 229 LIHGPPGTGKT 239
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 168 EELQLIVAEKSQNLRRLQAQ 227
EEL+LI K ++ RRLQAQ
Sbjct: 275 EELELIAERKRESGRRLQAQ 294
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 458 NTTQQSRSSCVAHDGRESAGLYLRNGRWSRQTNQGD 565
N+T + SS A+ +S+G ++ NG+ + + G+
Sbjct: 233 NSTSKVMSSASANKPSKSSGFHINNGKSKEEKSHGE 268
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 630 PKGVLLYGPPGTGKTLLARAV 692
P V + GPPGTGK+ L +++
Sbjct: 74 PVIVAVMGPPGTGKSTLIKSL 94
>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +3
Query: 633 KGVLLYGPPGTGK-TLLARAVAHH 701
K V+++GP G GK TLL R + H
Sbjct: 19 KPVVVFGPSGVGKSTLLKRLLKDH 42
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,725,057
Number of Sequences: 5004
Number of extensions: 53034
Number of successful extensions: 234
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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