Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0557
(723 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.) 262 2e-70
SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.) 132 4e-31
SB_9909| Best HMM Match : AAA (HMM E-Value=0) 119 3e-27
SB_33442| Best HMM Match : AAA (HMM E-Value=0) 117 1e-26
SB_3774| Best HMM Match : DivIC (HMM E-Value=4.4) 116 2e-26
SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026) 111 6e-25
SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.) 83 2e-16
SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.) 80 2e-15
SB_45627| Best HMM Match : AAA (HMM E-Value=0) 79 4e-15
SB_48561| Best HMM Match : AAA (HMM E-Value=0) 79 5e-15
SB_37200| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 6e-14
SB_19460| Best HMM Match : AAA (HMM E-Value=0) 75 6e-14
SB_30385| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 5e-11
SB_33907| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 2e-10
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 63 2e-10
SB_49367| Best HMM Match : AAA (HMM E-Value=0) 58 7e-09
SB_7424| Best HMM Match : AAA (HMM E-Value=0) 57 1e-08
SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 2e-08
SB_35704| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 4e-08
SB_3115| Best HMM Match : AAA (HMM E-Value=0) 54 2e-07
SB_55690| Best HMM Match : AAA (HMM E-Value=0) 51 1e-06
SB_732| Best HMM Match : AAA (HMM E-Value=0) 46 4e-05
SB_5903| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 9e-04
SB_28977| Best HMM Match : AAA (HMM E-Value=0) 38 0.001
SB_46732| Best HMM Match : AAA (HMM E-Value=0.044) 38 0.008
SB_31892| Best HMM Match : AAA (HMM E-Value=6.2e-25) 34 0.10
SB_10418| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_30757| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064) 31 0.72
SB_32676| Best HMM Match : adh_short (HMM E-Value=1.2e-05) 31 0.72
SB_13785| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_25516| Best HMM Match : AAA_2 (HMM E-Value=0) 31 0.95
SB_23422| Best HMM Match : Propeptide_C1 (HMM E-Value=7.2) 31 0.95
SB_53383| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.95
SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0) 31 0.95
SB_47951| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_26897| Best HMM Match : AAA (HMM E-Value=4.2e-12) 30 1.7
SB_33932| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19) 30 2.2
SB_16447| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_2234| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19) 30 2.2
SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24) 29 2.9
SB_20265| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_833| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22) 29 5.0
SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_12803| Best HMM Match : Lig_chan (HMM E-Value=0) 29 5.0
SB_58879| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12) 28 6.7
SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_59437| Best HMM Match : AAA (HMM E-Value=7.4e-08) 28 6.7
SB_55825| Best HMM Match : Arch_fla_DE (HMM E-Value=2.9) 28 6.7
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_25750| Best HMM Match : AFG1_ATPase (HMM E-Value=5.6e-12) 28 6.7
SB_3946| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35) 28 8.8
SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 262 bits (642), Expect = 2e-70
Identities = 136/183 (74%), Positives = 146/183 (79%)
Frame = +3
Query: 174 LQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVH 353
++L+V EK +NLRRL+AQRNELNAKVRMLR GSYVGEVVKPMDKKKVLVKVH
Sbjct: 82 VKLVVTEKIKNLRRLEAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVH 141
Query: 354 PEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEM 533
PEGKFVVD+DK +D+ +V DPLVSLMMVEKVPDSTYEM
Sbjct: 142 PEGKFVVDIDKGIDMAEV-----------------------DPLVSLMMVEKVPDSTYEM 178
Query: 534 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 713
VGGLDKQIKEIKEVIELPVKHPELF+ALGI QPKGVLLYGPPGTGKTLLARAVAHHTECT
Sbjct: 179 VGGLDKQIKEIKEVIELPVKHPELFEALGIDQPKGVLLYGPPGTGKTLLARAVAHHTECT 238
Query: 714 FIR 722
FIR
Sbjct: 239 FIR 241
>SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 455
Score = 132 bits (318), Expect = 4e-31
Identities = 74/192 (38%), Positives = 111/192 (57%), Gaps = 3/192 (1%)
Frame = +3
Query: 156 ITKIEELQLIVAEKSQNLRRLQAQRN---ELNAKVRMLRXXXXXXXXXGSYVGEVVKPMD 326
+ +I++ L+ E QN RL+ Q E +KV LR VG + + +D
Sbjct: 260 LDRIKDFLLMEEEFIQNQERLKPQEEKHEEERSKVDDLRGTPMS-------VGNLEEIID 312
Query: 327 KKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVE 506
+V + V + VD + + C V L ++ + + +L + DP+V++M +E
Sbjct: 313 DNHAIVSTSVGSEHYVSILSFVDKDLLEPGCTVLLNHKVHAVVGVLSDDADPMVTVMKLE 372
Query: 507 KVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 686
K P +Y +GGLD QI+EIKE +ELP+ HPEL++ +GI PKGV+LYG PGTGKTLLA+
Sbjct: 373 KAPQESYADIGGLDTQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGQPGTGKTLLAK 432
Query: 687 AVAHHTECTFIR 722
AVA+ T TF+R
Sbjct: 433 AVANQTSATFLR 444
>SB_9909| Best HMM Match : AAA (HMM E-Value=0)
Length = 400
Score = 119 bits (286), Expect = 3e-27
Identities = 56/97 (57%), Positives = 72/97 (74%)
Frame = +3
Query: 432 RNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFD 611
RN+ Y +H LP K+DP V++M VE+ PD TY +GG +QI +++EV+E P+ HPE F
Sbjct: 53 RNK-YQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIDKLREVVETPLLHPERFV 111
Query: 612 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 722
LGI PKGVLL+GPPGTGKTL ARAVA+ T+ FIR
Sbjct: 112 NLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIR 148
>SB_33442| Best HMM Match : AAA (HMM E-Value=0)
Length = 369
Score = 117 bits (281), Expect = 1e-26
Identities = 56/141 (39%), Positives = 87/141 (61%)
Frame = +3
Query: 300 VGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVD 479
+G+ ++ +D+ +V + V + +D + + VAL S L ILP + D
Sbjct: 88 IGQFLEAVDQNTGIVASTTGSNYYVRILSTIDKELLKPSASVALHKHSNALVDILPPEAD 147
Query: 480 PLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 659
++++ E+ P+ +Y +GG+D Q +EI+E +ELP+ H EL+ +GI P+GVLLYGPP
Sbjct: 148 SSIAMLTNEEKPNVSYAEIGGMDIQKQEIREAVELPLTHFELYKQIGIDPPRGVLLYGPP 207
Query: 660 GTGKTLLARAVAHHTECTFIR 722
G GKT+LA+AVAHHT FIR
Sbjct: 208 GCGKTMLAKAVAHHTTAAFIR 228
>SB_3774| Best HMM Match : DivIC (HMM E-Value=4.4)
Length = 158
Score = 116 bits (279), Expect = 2e-26
Identities = 55/75 (73%), Positives = 63/75 (84%)
Frame = +3
Query: 174 LQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVH 353
++L+V EK +NLRRL+AQRNELNAKVRMLR GSYVGEVVKPMDKKKVLVKVH
Sbjct: 82 VKLVVTEKIKNLRRLEAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVH 141
Query: 354 PEGKFVVDLDKNVDI 398
PEGKFVVD+DK +D+
Sbjct: 142 PEGKFVVDIDKGIDM 156
>SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
Length = 779
Score = 111 bits (267), Expect = 6e-25
Identities = 57/124 (45%), Positives = 80/124 (64%)
Frame = +3
Query: 291 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPN 470
G VGEV+K + ++K +VK ++VV + VD + RVAL + T+ + LP
Sbjct: 56 GQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQVDKAKLKQGTRVALDMTTLTIMRYLPR 115
Query: 471 KVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 650
+VDPLV M E + +Y VGGL +QI+E++EVIELP+ +PELF +GIA PKG LL+
Sbjct: 116 EVDPLVYNMSHEDPGNISYSDVGGLSEQIRELREVIELPLTNPELFQRVGIAPPKGCLLF 175
Query: 651 GPPG 662
GPPG
Sbjct: 176 GPPG 179
>SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 802
Score = 83.0 bits (196), Expect = 2e-16
Identities = 34/65 (52%), Positives = 51/65 (78%)
Frame = +3
Query: 522 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 701
+++ +GGL QI+ ++E+IE+P+ +PELF A G+ P+G+LLYGP GTGKT++ARAVA+
Sbjct: 254 SFQSIGGLKTQIQAVREMIEMPLTNPELFTAYGVPPPRGILLYGPSGTGKTMIARAVANE 313
Query: 702 TECTF 716
T F
Sbjct: 314 TGVHF 318
Score = 76.6 bits (180), Expect = 2e-14
Identities = 34/71 (47%), Positives = 48/71 (67%)
Frame = +3
Query: 507 KVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 686
+VP + VGG + +++KE +E P+KHPE F LGI P+G+L+YGPPG KTL+AR
Sbjct: 530 EVPKVHWSDVGGNEMIKRKLKEAVEWPLKHPEAFQRLGIRPPRGILMYGPPGCSKTLIAR 589
Query: 687 AVAHHTECTFI 719
A+A + FI
Sbjct: 590 ALATESGLNFI 600
>SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1086
Score = 80.2 bits (189), Expect = 2e-15
Identities = 41/69 (59%), Positives = 54/69 (78%)
Frame = +3
Query: 507 KVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 686
K+PD +++ VGGLD +EI + I+LP+ HPELF A G+ + GVLLYGPPGTGKTL+A+
Sbjct: 805 KIPDISWKDVGGLDSVKEEILDTIQLPLLHPELF-AAGLRR-SGVLLYGPPGTGKTLMAK 862
Query: 687 AVAHHTECT 713
AVA TEC+
Sbjct: 863 AVA--TECS 869
>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
Length = 628
Score = 79.0 bits (186), Expect = 4e-15
Identities = 33/73 (45%), Positives = 53/73 (72%)
Frame = +3
Query: 501 VEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 680
V +VP+ +++ +GGL+ +E++E+++ PV+HP+ F G+ KGVL YGPPG GKTLL
Sbjct: 301 VVEVPNVSWDDIGGLEGVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 360
Query: 681 ARAVAHHTECTFI 719
A+A+A+ + FI
Sbjct: 361 AKAIANECQANFI 373
>SB_48561| Best HMM Match : AAA (HMM E-Value=0)
Length = 2021
Score = 78.6 bits (185), Expect = 5e-15
Identities = 35/63 (55%), Positives = 50/63 (79%)
Frame = +3
Query: 525 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 704
++ VGGL+KQI+ +KE+I P+ +PE+FD I P+GVL +GPPGTGKTL+ARA+A+
Sbjct: 883 FDSVGGLNKQIQALKEMILFPLVYPEVFDKFKITPPRGVLFFGPPGTGKTLVARALAN-- 940
Query: 705 ECT 713
EC+
Sbjct: 941 ECS 943
>SB_37200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 908
Score = 74.9 bits (176), Expect = 6e-14
Identities = 33/73 (45%), Positives = 49/73 (67%)
Frame = +3
Query: 501 VEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 680
V ++ + ++ VGGL+ + +++ IE P+ HPE F +G+ +P+GVLLYGPPG KT L
Sbjct: 475 VVRLQPTRWDDVGGLEGVKQALRQAIEWPLLHPEAFARMGLRRPRGVLLYGPPGCCKTTL 534
Query: 681 ARAVAHHTECTFI 719
RA A T CTF+
Sbjct: 535 VRAAASSTHCTFM 547
Score = 65.3 bits (152), Expect = 5e-11
Identities = 37/95 (38%), Positives = 54/95 (56%)
Frame = +3
Query: 396 INDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEV 575
I DVT+ + N +Y ++ K + + + V DS ++ GLD IK +KE+
Sbjct: 174 IEDVTS----VIDNNAYV---VITEKTNINIESVKVGSSVDSGNIILSGLDDSIKMLKEL 226
Query: 576 IELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 680
++ P+ +PE F LGI PKG+LL G PG GKTLL
Sbjct: 227 VQFPLYYPESFSHLGINGPKGILLVGAPGVGKTLL 261
>SB_19460| Best HMM Match : AAA (HMM E-Value=0)
Length = 340
Score = 74.9 bits (176), Expect = 6e-14
Identities = 33/73 (45%), Positives = 49/73 (67%)
Frame = +3
Query: 501 VEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 680
V ++ + ++ VGGL+ + +++ IE P+ HPE F +G+ +P+GVLLYGPPG KT L
Sbjct: 4 VVRLQPTRWDDVGGLEGVKQALRQAIEWPLLHPEAFARMGLRRPRGVLLYGPPGCCKTTL 63
Query: 681 ARAVAHHTECTFI 719
RA A T CTF+
Sbjct: 64 VRAAASSTHCTFM 76
>SB_30385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 65.3 bits (152), Expect = 5e-11
Identities = 37/95 (38%), Positives = 54/95 (56%)
Frame = +3
Query: 396 INDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEV 575
I DVT+ + N +Y ++ K + + + V DS ++ GLD IK +KE+
Sbjct: 4 IEDVTS----VIDNNAYV---VITEKTNINIESVKVGSSVDSGNIILSGLDDSIKMLKEL 56
Query: 576 IELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 680
++ P+ +PE F LGI PKG+LL G PG GKTLL
Sbjct: 57 VQFPLYYPESFSHLGINGPKGILLVGAPGVGKTLL 91
>SB_33907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/45 (60%), Positives = 34/45 (75%)
Frame = +3
Query: 585 PVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFI 719
PV+HPE F ALG+ P G+LL GPPG GKTLLA+A+A+ + FI
Sbjct: 2 PVQHPEEFSALGLTHPPGILLAGPPGCGKTLLAKAIANESGINFI 46
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/45 (60%), Positives = 34/45 (75%)
Frame = +3
Query: 585 PVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFI 719
PV+HPE F ALG+ P G+LL GPPG GKTLLA+A+A+ + FI
Sbjct: 2 PVQHPEEFSALGLTHPPGILLAGPPGCGKTLLAKAIANESGINFI 46
>SB_49367| Best HMM Match : AAA (HMM E-Value=0)
Length = 976
Score = 58.0 bits (134), Expect = 7e-09
Identities = 25/63 (39%), Positives = 41/63 (65%)
Frame = +3
Query: 534 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 713
+GG ++++ +++ + + HPE+F LG+ G LL+GPPG GKTLLA A+A E
Sbjct: 679 IGGCSNTLEQVGKLL-VHMCHPEVFTTLGVTPTTGFLLHGPPGCGKTLLAHAIAGELEMP 737
Query: 714 FIR 722
F++
Sbjct: 738 FLK 740
>SB_7424| Best HMM Match : AAA (HMM E-Value=0)
Length = 294
Score = 57.2 bits (132), Expect = 1e-08
Identities = 31/73 (42%), Positives = 43/73 (58%)
Frame = +3
Query: 501 VEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 680
V V +S + V G ++ EI E + +K+P+ + LG PKG +L GPPGTGKTLL
Sbjct: 39 VTYVKESEWIDVAGCEEAKLEIMEFVNF-LKNPQQYHELGAKIPKGAILSGPPGTGKTLL 97
Query: 681 ARAVAHHTECTFI 719
A+AVA F+
Sbjct: 98 AKAVAGEAGVPFL 110
>SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 56.4 bits (130), Expect = 2e-08
Identities = 31/72 (43%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = +3
Query: 498 MVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKT 674
+++K P+ + + L + K ++E + LP+ P+ F GI +P +GVL+ GPPGTGKT
Sbjct: 240 ILQKNPNVHWADIADLHEAKKLLEEAVVLPLLMPDYFQ--GIRRPWRGVLMVGPPGTGKT 297
Query: 675 LLARAVAHHTEC 710
+LA+AVA TEC
Sbjct: 298 MLAKAVA--TEC 307
>SB_35704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 55.6 bits (128), Expect = 4e-08
Identities = 28/51 (54%), Positives = 38/51 (74%)
Frame = +3
Query: 543 LDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 695
+D+ +E++EV+E +++PE F LG P GVLL G PGTGKTLLA+AVA
Sbjct: 136 VDEAKEELQEVVEF-LRNPEKFKRLGGKLPTGVLLIGSPGTGKTLLAKAVA 185
>SB_3115| Best HMM Match : AAA (HMM E-Value=0)
Length = 913
Score = 53.6 bits (123), Expect = 2e-07
Identities = 27/65 (41%), Positives = 39/65 (60%)
Frame = +3
Query: 525 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 704
++ V G+ + E+ E ++ +K + LG PKG LL GPPGTGKTLLA+AVA
Sbjct: 124 FKDVAGMQEAKMEVMEFVDY-LKSAGRYTQLGAKIPKGALLVGPPGTGKTLLAKAVATEA 182
Query: 705 ECTFI 719
+ F+
Sbjct: 183 DVPFL 187
>SB_55690| Best HMM Match : AAA (HMM E-Value=0)
Length = 1031
Score = 50.8 bits (116), Expect = 1e-06
Identities = 29/65 (44%), Positives = 35/65 (53%)
Frame = +3
Query: 525 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 704
+E VGGL ++E + P K LF + G+LLYGPPGTGKTLLA VA
Sbjct: 666 WENVGGLGPVKGVLQETLLWPSKFAGLFAKCPLRLRGGLLLYGPPGTGKTLLAGVVAKEC 725
Query: 705 ECTFI 719
FI
Sbjct: 726 GLNFI 730
>SB_732| Best HMM Match : AAA (HMM E-Value=0)
Length = 388
Score = 45.6 bits (103), Expect = 4e-05
Identities = 17/31 (54%), Positives = 25/31 (80%)
Frame = +3
Query: 600 ELFDALGIAQPKGVLLYGPPGTGKTLLARAV 692
++ D +G+ KG+LL+GPPGTGKTL+AR +
Sbjct: 172 DVVDKMGLKHVKGILLFGPPGTGKTLMARQI 202
>SB_5903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 41.1 bits (92), Expect = 9e-04
Identities = 22/79 (27%), Positives = 41/79 (51%)
Frame = +3
Query: 330 KKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEK 509
K ++K + + + V+ ++T V + +SY + + LP + D V M V++
Sbjct: 88 KCAVIKTSTRQTYFLPVIGLVEPENLTPGDLVGVNKDSYLILEKLPAEYDSRVKAMEVDE 147
Query: 510 VPDSTYEMVGGLDKQIKEI 566
P Y +GGLD+QI+E+
Sbjct: 148 RPTEQYSDIGGLDQQIQEM 166
>SB_28977| Best HMM Match : AAA (HMM E-Value=0)
Length = 442
Score = 37.5 bits (83), Expect(2) = 0.001
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +3
Query: 483 LVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYG 653
L S +++EK P+ + + GL+ + +KE + LP+K P LF G P +G+LLYG
Sbjct: 83 LNSAIVMEK-PNVKWSDIAGLESAKEALKEAVILPIKFPHLF--TGKRTPWRGILLYG 137
Score = 22.2 bits (45), Expect(2) = 0.001
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +3
Query: 660 GTGKTLLARAVA-HHTECTFI 719
GTGK+ LA+AVA TFI
Sbjct: 175 GTGKSYLAKAVATEANNSTFI 195
>SB_46732| Best HMM Match : AAA (HMM E-Value=0.044)
Length = 430
Score = 37.9 bits (84), Expect = 0.008
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = +3
Query: 633 KGVLLYGPPGTGKTLLARAVAHHT 704
+ +L YGPPGTGKT+ A+++A H+
Sbjct: 330 RNLLFYGPPGTGKTMFAKSLARHS 353
>SB_31892| Best HMM Match : AAA (HMM E-Value=6.2e-25)
Length = 420
Score = 34.3 bits (75), Expect = 0.10
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +3
Query: 543 LDKQIKE--IKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 695
LD+ I E + +V E + P + GI +G LLYGPPG GK+ +A+A
Sbjct: 192 LDEGIAEGILADVKEF-IGSPRWYMDRGIPYRRGYLLYGPPGCGKSSFIQALA 243
>SB_10418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 33.1 bits (72), Expect = 0.23
Identities = 16/31 (51%), Positives = 17/31 (54%)
Frame = +3
Query: 609 DALGIAQPKGVLLYGPPGTGKTLLARAVAHH 701
D G K LL GPPG GKT LA +A H
Sbjct: 373 DDNGYPVHKVALLCGPPGLGKTTLAHVIAQH 403
>SB_30757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 32.3 bits (70), Expect = 0.41
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = +2
Query: 404 CHGQLSCRSSQRKLYLTQNTTQQSRSSCV 490
CH LSC SQR L Q Q+SR CV
Sbjct: 114 CHVGLSCLKSQRTLRALQKALQRSRVECV 142
>SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)
Length = 1064
Score = 31.5 bits (68), Expect = 0.72
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 618 GIAQPKGVLLYGPPGTGKTL 677
G ++P L++GPPGTGKT+
Sbjct: 547 GTSRPHPYLIFGPPGTGKTI 566
>SB_32676| Best HMM Match : adh_short (HMM E-Value=1.2e-05)
Length = 201
Score = 31.5 bits (68), Expect = 0.72
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = +3
Query: 363 KFVVDLDKNV---DINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEM 533
K ++D D V DIN+ T N + L +E+Y+ H++L K D + S +E T ++
Sbjct: 23 KALLDRDGKVCMLDINEKTGNETLKLLSENYSKHRVLFIKCD-VTSQPQMEAAFQRTKDV 81
Query: 534 VGGLD 548
G LD
Sbjct: 82 FGRLD 86
>SB_13785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 31.5 bits (68), Expect = 0.72
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 537 GGLDKQIKEIKEVIE-LPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 713
GG D+ KEI V E +P D I V + G PG+GKT LA+ +A + T
Sbjct: 311 GGPDEAFKEISRVFEGVPDSSNAALDDFDI-----VFIVGGPGSGKTELAKLLAESSGRT 365
Query: 714 FI 719
I
Sbjct: 366 HI 367
>SB_25516| Best HMM Match : AAA_2 (HMM E-Value=0)
Length = 609
Score = 31.1 bits (67), Expect = 0.95
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 639 VLLYGPPGTGKTLLARAVAHHTECTF 716
+LL GP G+GKTLLA+ +A + F
Sbjct: 273 ILLLGPTGSGKTLLAQTIARCLDVPF 298
>SB_23422| Best HMM Match : Propeptide_C1 (HMM E-Value=7.2)
Length = 628
Score = 31.1 bits (67), Expect = 0.95
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 618 GIAQPKGVLLYGPPGTGKTL 677
G ++P LL+GPPGTGKT+
Sbjct: 587 GQSRPTPYLLFGPPGTGKTV 606
>SB_53383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 140
Score = 31.1 bits (67), Expect = 0.95
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +3
Query: 615 LGIAQPKGVLLYGPPGTGKTLLARAVA 695
L +A GVLL GP G+GKT L VA
Sbjct: 113 LAVAAGSGVLLEGPVGSGKTCLVEHVA 139
>SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0)
Length = 2065
Score = 31.1 bits (67), Expect = 0.95
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +3
Query: 615 LGIAQPKGVLLYGPPGTGKTLLARAVA 695
L +A GVLL GP G+GKT L VA
Sbjct: 113 LAVAAGSGVLLEGPVGSGKTCLVEHVA 139
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 630 PKGVLLYGPPGTGKTLLARAVA 695
P+ +LL G PG GKT L A+A
Sbjct: 1617 PRPILLEGSPGVGKTSLVSAIA 1638
>SB_47951| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 437
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/24 (54%), Positives = 19/24 (79%), Gaps = 2/24 (8%)
Frame = +3
Query: 609 DALGIA--QPKGVLLYGPPGTGKT 674
+A+G A QP+ +++GPPGTGKT
Sbjct: 241 EAVGFALRQPEVAVIHGPPGTGKT 264
>SB_26897| Best HMM Match : AAA (HMM E-Value=4.2e-12)
Length = 230
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +3
Query: 639 VLLYGPPGTGKTLLARAVA 695
+L YGPPGTGKT AVA
Sbjct: 13 LLFYGPPGTGKTSTILAVA 31
>SB_33932| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19)
Length = 541
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 393 DINDVTANCRVALRNESYTLHKILPNKVDPL 485
DI ++ C+VA E +TL + LPN +D L
Sbjct: 154 DIRPISLTCQVAKLMEGFTLSRALPNILDRL 184
>SB_16447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 393 DINDVTANCRVALRNESYTLHKILPNKVDPL 485
DI ++ C+VA E +TL + LPN +D L
Sbjct: 525 DIRPISLTCQVAKLMEGFTLSRALPNILDRL 555
>SB_2234| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19)
Length = 476
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 393 DINDVTANCRVALRNESYTLHKILPNKVDPL 485
DI ++ C+VA E +TL + LPN +D L
Sbjct: 89 DIRPISLTCQVAKLMEGFTLSRALPNILDRL 119
>SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24)
Length = 1065
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 381 DKNVDINDVTANCRVALRNESYTLHKILPNKVDPL 485
D N+ + + +CR A+ E+++ H PN VDPL
Sbjct: 215 DCNLQLTCLQPSCRYAVLVEAFSSHPNDPNAVDPL 249
>SB_20265| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/52 (21%), Positives = 27/52 (51%)
Frame = +3
Query: 402 DVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQI 557
D+ + L + LHK++PN V+ + + ++ D ++ ++G D ++
Sbjct: 463 DLVKKAQTTLATANLRLHKVVPNSVEVMEAFPAEDRAKDISWGVLGPRDGRV 514
>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 378 LDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVP 515
+D+N + + N +L L ++PN VD + M++KVP
Sbjct: 952 IDENFKVWLIEINVNPSLSTSCQVLKDLMPNMVDNTIRPEMIQKVP 997
>SB_833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +3
Query: 72 HESQ*RNMTLTTKMEVDTVKGEGFRPYYITKIEELQLIVAEKSQNLRRLQ 221
HE+Q R + LT E KG+ F KI+ELQ V + +Q ++ L+
Sbjct: 123 HEAQRREVVLTKDYERAVEKGDNF----YAKIDELQEKVDDTTQKIKLLE 168
>SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22)
Length = 455
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +3
Query: 624 AQPKGVLLYGPPGTGKTLLARAV 692
A K VLL GPPG GKT L V
Sbjct: 49 AYKKHVLLTGPPGIGKTTLCSKV 71
>SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1669
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +3
Query: 393 DINDVTANCRVALRNESYTLHKILP---NKVDP 482
DI + C+VA E +TL++ILP K+DP
Sbjct: 1274 DIRPIALTCQVAKVMEGFTLNRILPPIMRKLDP 1306
>SB_12803| Best HMM Match : Lig_chan (HMM E-Value=0)
Length = 1001
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = -2
Query: 491 RHKRIDFVG*YFV*GIAFVAKSDTTIGRDIVNINVLV 381
R + IDF Y GI +A++DTT+G +VN++ ++
Sbjct: 390 RSRVIDFSSPYGEVGIGILARTDTTLG-SVVNMDFMI 425
>SB_58879| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1786
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +3
Query: 306 EVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPL 485
+ V P+ K + VHP K D+ ++ C++A E +TL ++LP+ ++ L
Sbjct: 309 DFVPPLLKSAI---VHPISKQTPPKSIKDDLRPISLTCQMAKICEGFTLIRVLPSVLEQL 365
>SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 808
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/51 (27%), Positives = 30/51 (58%)
Frame = +3
Query: 450 LHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPE 602
L+K+L ++ S+ +E+ + + V GL+K+IK++++ EL K +
Sbjct: 511 LNKVLERNMELESSVSAMERKNKALEKSVNGLEKEIKKMEQNYELKSKESD 561
>SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)
Length = 1799
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 393 DINDVTANCRVALRNESYTLHKILPNKVDPL 485
DI ++ C+VA E TL + LPN +D L
Sbjct: 473 DIRPISLTCQVAKLMEGLTLSRALPNILDRL 503
>SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3133
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = +3
Query: 543 LDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 698
L K KE I VK +LF + + K VLL G PG GKT L + + +
Sbjct: 959 LKKLFKE--PTISENVKINDLFKSKTKKRMKRVLLEGNPGVGKTTLCKKLVN 1008
>SB_59437| Best HMM Match : AAA (HMM E-Value=7.4e-08)
Length = 568
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 624 AQPKGVLLYGPPGTGKTLLARAVAHHTECTFI 719
A K LL GPPG GKT A V +++
Sbjct: 269 ASLKAALLSGPPGVGKTTTATLVCQELGYSYV 300
>SB_55825| Best HMM Match : Arch_fla_DE (HMM E-Value=2.9)
Length = 208
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = +3
Query: 543 LDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 698
L K KE I VK +LF + + K VLL G PG GKT L + + +
Sbjct: 146 LKKLFKE--PTISENVKINDLFKSKTKKRMKRVLLEGNPGVGKTTLCKKLVN 195
>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2408
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 164 LGYVVRAKTLTLHRVHFHFSRESHI 90
LG + RA+T+ LHR SRE H+
Sbjct: 118 LGELERAQTVLLHRASSRHSREEHV 142
>SB_25750| Best HMM Match : AFG1_ATPase (HMM E-Value=5.6e-12)
Length = 424
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 630 PKGVLLYGPPGTGKTLL 680
PKG+ LYG G+GKT+L
Sbjct: 8 PKGLYLYGGVGSGKTIL 24
>SB_3946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 393 DINDVTANCRVALRNESYTLHKILPNKVDPL 485
DI ++ C+VA E TL + LPN +D L
Sbjct: 511 DIRPISLTCQVAKLMEGLTLSRALPNILDRL 541
>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
Length = 2748
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 642 LLYGPPGTGKTLLARAVAHH 701
++YG PGTGK+ A A+A H
Sbjct: 2169 MVYGQPGTGKSWTAVAIACH 2188
>SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1837
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +3
Query: 393 DINDVTANCRVALRNESYTLHKILP---NKVDP 482
DI + C+VA E +TL +ILP K+DP
Sbjct: 1491 DIRPIALTCQVAKVMEGFTLSRILPPIMRKLDP 1523
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,591,080
Number of Sequences: 59808
Number of extensions: 395461
Number of successful extensions: 1191
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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