Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0557
(723 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 310 8e-85
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 308 2e-84
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 141 5e-34
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 140 6e-34
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 136 1e-32
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 136 1e-32
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 134 7e-32
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 134 7e-32
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 116 2e-26
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 109 2e-24
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 109 2e-24
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 95 4e-20
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 93 1e-19
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 93 1e-19
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 73 3e-13
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 72 3e-13
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 72 3e-13
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 72 4e-13
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 71 6e-13
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 71 8e-13
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 70 1e-12
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 69 2e-12
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6... 68 6e-12
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6... 68 6e-12
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 67 1e-11
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 67 1e-11
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 67 1e-11
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 67 1e-11
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 67 1e-11
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 66 2e-11
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 66 2e-11
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 66 2e-11
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 66 3e-11
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 66 3e-11
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 65 4e-11
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 65 4e-11
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 65 4e-11
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 64 7e-11
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 64 7e-11
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ... 64 7e-11
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 64 7e-11
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 63 2e-10
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 60 2e-09
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 59 3e-09
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 59 3e-09
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 58 4e-09
At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 58 4e-09
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 57 1e-08
At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI... 57 1e-08
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 56 2e-08
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 55 4e-08
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 54 1e-07
At3g02450.1 68416.m00232 cell division protein ftsH, putative si... 53 2e-07
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ... 49 3e-06
At5g17760.2 68418.m02083 AAA-type ATPase family protein contains... 48 8e-06
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains... 48 8e-06
At3g50930.1 68416.m05576 AAA-type ATPase family protein contains... 47 1e-05
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains... 47 1e-05
At3g50940.1 68416.m05577 AAA-type ATPase family protein contains... 46 3e-05
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 45 4e-05
At2g18193.1 68415.m02117 AAA-type ATPase family protein contains... 45 4e-05
At2g18190.1 68415.m02116 AAA-type ATPase family protein contains... 45 6e-05
At1g43910.1 68414.m05066 AAA-type ATPase family protein contains... 44 1e-04
At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, ... 42 3e-04
At5g17730.1 68418.m02079 AAA-type ATPase family protein contains... 42 4e-04
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains... 41 7e-04
At3g28570.1 68416.m03567 AAA-type ATPase family protein contains... 41 7e-04
At5g17750.1 68418.m02081 AAA-type ATPase family protein contains... 41 0.001
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 41 0.001
At4g05380.1 68417.m00820 AAA-type ATPase family protein contains... 40 0.001
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 40 0.002
At4g30250.1 68417.m04301 AAA-type ATPase family protein contains... 39 0.003
At3g28520.1 68416.m03562 AAA-type ATPase family protein contains... 39 0.003
At1g21690.1 68414.m02714 replication factor C 37 kDa, putative S... 39 0.004
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains... 38 0.005
At5g40010.1 68418.m04852 AAA-type ATPase family protein contains... 38 0.005
At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc... 38 0.005
At4g25835.1 68417.m03716 AAA-type ATPase family protein contains... 38 0.007
At3g28610.1 68416.m03571 AAA-type ATPase family protein contains... 38 0.009
At3g28540.1 68416.m03564 AAA-type ATPase family protein contains... 37 0.012
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 37 0.012
At5g16930.1 68418.m01984 AAA-type ATPase family protein contains... 36 0.036
At1g21690.2 68414.m02715 replication factor C 37 kDa, putative S... 36 0.036
At1g08270.2 68414.m00912 expressed protein low similarity to SP|... 36 0.036
At4g36580.1 68417.m05193 AAA-type ATPase family protein contains... 35 0.047
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains... 35 0.047
At3g03060.1 68416.m00302 AAA-type ATPase family protein contains... 35 0.063
At2g46620.1 68415.m05815 AAA-type ATPase family protein contains... 35 0.063
At3g05780.1 68416.m00649 Lon protease, putative similar to Lon p... 34 0.083
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 34 0.083
At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a... 33 0.14
At4g24710.1 68417.m03536 AAA-type ATPase family protein similar ... 33 0.14
At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR... 33 0.19
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 33 0.19
At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding ... 33 0.25
At2g37280.1 68415.m04573 ABC transporter family protein similar ... 32 0.33
At5g47010.1 68418.m05794 RNA helicase, putative similar to type ... 32 0.44
At1g77470.1 68414.m09021 replication factor C 36 kDA, putative s... 32 0.44
At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding ... 32 0.44
At5g22330.1 68418.m02605 TATA box-binding protein-interacting pr... 31 0.58
At2g36380.1 68415.m04464 ABC transporter family protein related ... 31 0.58
At3g05790.1 68416.m00650 Lon protease, putative similar to Lon p... 31 0.77
At1g15520.1 68414.m01867 ABC transporter family protein similar ... 31 0.77
At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding ... 31 1.0
At1g66950.1 68414.m07612 ABC transporter family protein similar ... 31 1.0
At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP1... 30 1.4
At2g16870.1 68415.m01941 disease resistance protein (TIR-NBS-LRR... 30 1.4
At4g15236.1 68417.m02335 ABC transporter family protein similar ... 30 1.8
At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam pr... 30 1.8
At2g29940.1 68415.m03642 ABC transporter family protein similar ... 30 1.8
At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR... 30 1.8
At1g63880.1 68414.m07234 disease resistance protein (TIR-NBS-LRR... 30 1.8
At1g60700.1 68414.m06833 forkhead-associated domain-containing p... 30 1.8
At1g15210.1 68414.m01818 ABC transporter family protein Similar ... 30 1.8
At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive eff... 29 2.4
At4g15230.1 68417.m02333 ABC transporter family protein similar ... 29 2.4
At4g15215.1 68417.m02332 ABC transporter family protein similar ... 29 2.4
At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyri... 29 2.4
At3g16340.1 68416.m02066 ABC transporter family protein similar ... 29 2.4
At1g63750.1 68414.m07214 disease resistance protein (TIR-NBS-LRR... 29 2.4
At1g63160.1 68414.m07138 replication factor C 40 kDa, putative s... 29 2.4
At1g08270.1 68414.m00913 expressed protein low similarity to SP|... 29 2.4
At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR... 29 3.1
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR... 29 3.1
At4g30490.1 68417.m04329 AFG1-like ATPase family protein contain... 29 3.1
At3g53480.1 68416.m05904 ABC transporter family protein PDR5-lik... 29 3.1
At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR... 29 3.1
At1g73170.1 68414.m08466 expressed protein 29 3.1
At1g24290.1 68414.m03065 AAA-type ATPase family protein similar ... 29 3.1
At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR... 29 4.1
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 29 4.1
At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identic... 29 4.1
At1g59870.1 68414.m06745 ABC transporter family protein similar ... 29 4.1
At1g04730.1 68414.m00469 AAA-type ATPase family protein contains... 29 4.1
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 28 5.5
At4g26090.1 68417.m03756 disease resistance protein RPS2 (CC-NBS... 28 5.5
At1g14460.1 68414.m01715 DNA polymerase-related weak similarity ... 28 5.5
At1g06720.1 68414.m00714 expressed protein contains Pfam domain,... 28 5.5
At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR... 28 7.2
At4g38870.1 68417.m05504 F-box family protein contains Pfam prof... 28 7.2
At4g28070.1 68417.m04026 AFG1-like ATPase family protein contain... 28 7.2
At1g79050.1 68414.m09217 DNA repair protein recA identical to DN... 28 7.2
At5g60340.1 68418.m07564 maoC-like dehydratase domain-containing... 27 9.5
At5g47040.1 68418.m05797 Lon protease homolog 1, mitochondrial (... 27 9.5
At4g15233.1 68417.m02334 ABC transporter family protein similar ... 27 9.5
At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR... 27 9.5
At3g29185.2 68416.m03659 expressed protein 27 9.5
At3g29185.1 68416.m03658 expressed protein 27 9.5
At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR... 27 9.5
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 310 bits (760), Expect = 8e-85
Identities = 144/198 (72%), Positives = 169/198 (85%)
Frame = +3
Query: 129 KGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGE 308
+GEG YY+ ++ELQ + EKS NL RL+AQRNELN++VRMLR GSYVGE
Sbjct: 28 QGEGLNKYYLQHLDELQRLQREKSYNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGE 87
Query: 309 VVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLV 488
VVK M K KVLVKVHPEGK+VVD+DK++DI +T + RVALRN+SY LH +LP+KVDPLV
Sbjct: 88 VVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLV 147
Query: 489 SLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTG 668
+LM VEKVPDSTY+M+GGLD+QIKEIKEVIELP+KHPELF++LGIAQPKGVLLYGPPGTG
Sbjct: 148 NLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTG 207
Query: 669 KTLLARAVAHHTECTFIR 722
KTLLARAVAHHT+CTFIR
Sbjct: 208 KTLLARAVAHHTDCTFIR 225
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 308 bits (757), Expect = 2e-84
Identities = 143/198 (72%), Positives = 169/198 (85%)
Frame = +3
Query: 129 KGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGE 308
+GEG + YY+ I ELQ + +K+ NL RL+AQRNELN++VRMLR GSYVGE
Sbjct: 28 QGEGLKQYYLQHIHELQRQLRQKTNNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGE 87
Query: 309 VVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLV 488
VVK M K KVLVKVHPEGK+VVD+DK++DI +T + RVALRN+SY LH +LP+KVDPLV
Sbjct: 88 VVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLV 147
Query: 489 SLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTG 668
+LM VEKVPDSTY+M+GGLD+QIKEIKEVIELP+KHPELF++LGIAQPKGVLLYGPPGTG
Sbjct: 148 NLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTG 207
Query: 669 KTLLARAVAHHTECTFIR 722
KTLLARAVAHHT+CTFIR
Sbjct: 208 KTLLARAVAHHTDCTFIR 225
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 141 bits (341), Expect = 5e-34
Identities = 74/185 (40%), Positives = 114/185 (61%)
Frame = +3
Query: 168 EELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVK 347
+EL+ V +NLR + + N+ ++ L+ G +GEV++P+D ++++VK
Sbjct: 26 KELESRVRTARENLRAAKKEFNKTEDDLKSLQSV-------GQIIGEVLRPLDNERLIVK 78
Query: 348 VHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTY 527
++VV VD +T+ RV L + T+ + LP +VDP+V M+ E + +Y
Sbjct: 79 ASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISY 138
Query: 528 EMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE 707
VGGL QI+E++E IELP+ +PELF +GI PKGVLLYGPPGTGKTLLARA+A + +
Sbjct: 139 SAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID 198
Query: 708 CTFIR 722
F++
Sbjct: 199 ANFLK 203
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 140 bits (340), Expect = 6e-34
Identities = 74/185 (40%), Positives = 114/185 (61%)
Frame = +3
Query: 168 EELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVK 347
+EL+ V +NLR + + N+ ++ L+ G +GEV++P+D ++++VK
Sbjct: 26 KELESRVRTARENLRGAKKEFNKTEDDLKSLQSV-------GQIIGEVLRPLDNERLIVK 78
Query: 348 VHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTY 527
++VV VD +T+ RV L + T+ + LP +VDP+V M+ E + +Y
Sbjct: 79 ASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISY 138
Query: 528 EMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE 707
VGGL QI+E++E IELP+ +PELF +GI PKGVLLYGPPGTGKTLLARA+A + +
Sbjct: 139 SAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID 198
Query: 708 CTFIR 722
F++
Sbjct: 199 ANFLK 203
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 136 bits (330), Expect = 1e-32
Identities = 68/140 (48%), Positives = 90/140 (64%), Gaps = 1/140 (0%)
Frame = +3
Query: 306 EVVKP-MDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDP 482
+++ P + K ++ V KFVV L V D+ RV + Y + LP K+DP
Sbjct: 93 KIISPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDP 152
Query: 483 LVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPG 662
V++M VE+ PD TY VGG +QI++++EV+ELP+ HPE F LGI PKGVL YGPPG
Sbjct: 153 SVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPG 212
Query: 663 TGKTLLARAVAHHTECTFIR 722
TGKTLLARAVA+ T+ FIR
Sbjct: 213 TGKTLLARAVANRTDACFIR 232
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 136 bits (329), Expect = 1e-32
Identities = 66/140 (47%), Positives = 92/140 (65%), Gaps = 1/140 (0%)
Frame = +3
Query: 306 EVVKP-MDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDP 482
+++ P + K +V + GK+VV L D+ A RV + + Y + LP K+DP
Sbjct: 130 QIISPNTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDP 189
Query: 483 LVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPG 662
V++M VE+ PD+TY +GG +QI++I+EV+ELP+ HPE F LGI PKGVL YGPPG
Sbjct: 190 SVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPG 249
Query: 663 TGKTLLARAVAHHTECTFIR 722
+GKTL+ARAVA+ T FIR
Sbjct: 250 SGKTLVARAVANRTGACFIR 269
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 134 bits (323), Expect = 7e-32
Identities = 78/210 (37%), Positives = 124/210 (59%)
Frame = +3
Query: 93 MTLTTKMEVDTVKGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXX 272
+T +TK ++ +K E + Y + + E VA + + L+ + + E +KV LR
Sbjct: 55 VTPSTKCKLRLLKLERIKDYLLMEEE----FVANQ-ERLKPQEEKAEEDRSKVDDLRGTP 109
Query: 273 XXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTL 452
VG + + +D+ +V ++ V + VD + + C + + N+ ++
Sbjct: 110 MS-------VGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSV 162
Query: 453 HKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP 632
IL ++VDP+VS+M VEK P +Y +GGL+ QI+EIKE +ELP+ HPEL++ +GI P
Sbjct: 163 VGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPP 222
Query: 633 KGVLLYGPPGTGKTLLARAVAHHTECTFIR 722
KGV+LYG PGTGKTLLA+AVA+ T TF+R
Sbjct: 223 KGVILYGEPGTGKTLLAKAVANSTSATFLR 252
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 134 bits (323), Expect = 7e-32
Identities = 78/210 (37%), Positives = 124/210 (59%)
Frame = +3
Query: 93 MTLTTKMEVDTVKGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXX 272
+T +TK ++ +K E + Y + + E VA + + L+ + + E +KV LR
Sbjct: 55 VTPSTKCKLRLLKLERIKDYLLMEEE----FVANQ-ERLKPQEEKAEEDRSKVDDLRGTP 109
Query: 273 XXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTL 452
VG + + +D+ +V ++ V + VD + + C + + N+ ++
Sbjct: 110 MS-------VGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSV 162
Query: 453 HKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP 632
IL ++VDP+VS+M VEK P +Y +GGL+ QI+EIKE +ELP+ HPEL++ +GI P
Sbjct: 163 VGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPP 222
Query: 633 KGVLLYGPPGTGKTLLARAVAHHTECTFIR 722
KGV+LYG PGTGKTLLA+AVA+ T TF+R
Sbjct: 223 KGVILYGEPGTGKTLLAKAVANSTSATFLR 252
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 116 bits (278), Expect = 2e-26
Identities = 56/141 (39%), Positives = 86/141 (60%)
Frame = +3
Query: 300 VGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVD 479
+G+ ++ +D+ +V + V + ++ + + VAL S L +LP + D
Sbjct: 79 IGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEAD 138
Query: 480 PLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 659
+SL+ + PD +Y +GG D Q +EI+E +ELP+ H EL+ +GI P+GVLLYGPP
Sbjct: 139 SSISLLSQSEKPDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPP 198
Query: 660 GTGKTLLARAVAHHTECTFIR 722
GTGKT+LA+AVA+HT FIR
Sbjct: 199 GTGKTMLAKAVANHTTAAFIR 219
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 109 bits (262), Expect = 2e-24
Identities = 52/111 (46%), Positives = 71/111 (63%)
Frame = +3
Query: 390 VDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIK 569
VD + + V + +SY + LP++ D V M V++ P Y +GGL+KQI+E+
Sbjct: 125 VDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELV 184
Query: 570 EVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 722
E I LP+ H E F+ LG+ PKGVLLYGPPGTGKTL+ARA A T TF++
Sbjct: 185 EAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLK 235
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 109 bits (262), Expect = 2e-24
Identities = 53/111 (47%), Positives = 71/111 (63%)
Frame = +3
Query: 390 VDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIK 569
VD + + V + +SY + LP++ D V M V++ P Y +GGL+KQI+E+
Sbjct: 124 VDPDTLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELV 183
Query: 570 EVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 722
E I LP+ H E F+ LGI PKGVLLYGPPGTGKTL+ARA A T TF++
Sbjct: 184 EAIVLPMTHKEQFEKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLK 234
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 95.1 bits (226), Expect = 4e-20
Identities = 39/71 (54%), Positives = 58/71 (81%)
Frame = +3
Query: 504 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 683
E++ D Y+ VGG+ KQ+ +I+E++ELP++HP+LF ++G+ PKG+LLYGPPG+GKTL+A
Sbjct: 199 ERLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 258
Query: 684 RAVAHHTECTF 716
RAVA+ T F
Sbjct: 259 RAVANETGAFF 269
Score = 87.0 bits (206), Expect = 1e-17
Identities = 46/118 (38%), Positives = 74/118 (62%), Gaps = 1/118 (0%)
Frame = +3
Query: 369 VVDL-DKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGL 545
V+DL D ++D + + +A+ NE + H L N +P V +VP+ ++ +GGL
Sbjct: 432 VIDLEDDSIDAEILNS---MAVTNEHF--HTALGNS-NPSALRETVVEVPNVSWNDIGGL 485
Query: 546 DKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFI 719
+ +E++E ++ PV+HPE F+ G++ KGVL YGPPG GKTLLA+A+A+ + FI
Sbjct: 486 ENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 543
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 93.5 bits (222), Expect = 1e-19
Identities = 38/71 (53%), Positives = 58/71 (81%)
Frame = +3
Query: 504 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 683
E++ + Y+ VGG+ KQ+ +I+E++ELP++HP+LF ++G+ PKG+LLYGPPG+GKTL+A
Sbjct: 199 ERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 258
Query: 684 RAVAHHTECTF 716
RAVA+ T F
Sbjct: 259 RAVANETGAFF 269
Score = 89.0 bits (211), Expect = 3e-18
Identities = 47/118 (39%), Positives = 75/118 (63%), Gaps = 1/118 (0%)
Frame = +3
Query: 369 VVDL-DKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGL 545
V+DL D ++D + + +A+ NE + H L N +P V +VP+ ++E +GGL
Sbjct: 432 VIDLEDDSIDAEILNS---MAVSNEHF--HTALGNS-NPSALRETVVEVPNVSWEDIGGL 485
Query: 546 DKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFI 719
+ +E++E ++ PV+HPE F+ G++ KGVL YGPPG GKTLLA+A+A+ + FI
Sbjct: 486 ENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 543
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 93.5 bits (222), Expect = 1e-19
Identities = 38/71 (53%), Positives = 58/71 (81%)
Frame = +3
Query: 504 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 683
E++ + Y+ VGG+ KQ+ +I+E++ELP++HP+LF ++G+ PKG+LLYGPPG+GKTL+A
Sbjct: 200 ERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 259
Query: 684 RAVAHHTECTF 716
RAVA+ T F
Sbjct: 260 RAVANETGAFF 270
Score = 85.4 bits (202), Expect = 3e-17
Identities = 46/117 (39%), Positives = 73/117 (62%)
Frame = +3
Query: 369 VVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLD 548
V+DLD +I+ N +A+ N+ + L N +P V +VP+ ++E +GGL+
Sbjct: 433 VIDLDDE-EIDAEILNS-MAVSNDHF--QTALGNS-NPSALRETVVEVPNVSWEDIGGLE 487
Query: 549 KQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFI 719
+E++E ++ PV+HPE F+ G++ KGVL YGPPG GKTLLA+A+A+ + FI
Sbjct: 488 NVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 544
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 72.5 bits (170), Expect = 3e-13
Identities = 37/75 (49%), Positives = 52/75 (69%)
Frame = +3
Query: 489 SLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTG 668
S + KVP+ ++ VGGL+ I + ++LP+ H +LF + G+ + GVLLYGPPGTG
Sbjct: 645 SALGAPKVPNVKWDDVGGLEDVKTSILDTVQLPLLHKDLFSS-GLRKRSGVLLYGPPGTG 703
Query: 669 KTLLARAVAHHTECT 713
KTLLA+AVA TEC+
Sbjct: 704 KTLLAKAVA--TECS 716
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 72.1 bits (169), Expect = 3e-13
Identities = 39/104 (37%), Positives = 66/104 (63%), Gaps = 7/104 (6%)
Frame = +3
Query: 429 LRNESYTLHKILPNKV--DPLVSLMMVEKVPDS----TYEMVGGLDKQIKEIKEVIELPV 590
++NE+ +L K L + V + ++ + +P S +++ +G L+ + +KE++ LP+
Sbjct: 924 IQNENKSLKKSLKDVVTENEFEKKLLSDVIPPSDIGVSFDDIGALENVKETLKELVMLPL 983
Query: 591 KHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTECTFI 719
+ PELFD + +P KG+LL+GPPGTGKT+LA+AVA FI
Sbjct: 984 QRPELFDKGQLTKPTKGILLFGPPGTGKTMLAKAVATEAGANFI 1027
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 72.1 bits (169), Expect = 3e-13
Identities = 32/87 (36%), Positives = 55/87 (63%)
Frame = +3
Query: 456 KILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 635
KI + V P ++ + ++P T++ VGGL K++++ +E P+KH F +GI+ +
Sbjct: 262 KIAKSVVGPSINRGITVEIPKVTWDDVGGLKDLKKKLQQAVEWPIKHSAAFVKMGISPMR 321
Query: 636 GVLLYGPPGTGKTLLARAVAHHTECTF 716
G+LL+GPPG KT LA+A A+ + +F
Sbjct: 322 GILLHGPPGCSKTTLAKAAANAAQASF 348
Score = 60.5 bits (140), Expect = 1e-09
Identities = 26/62 (41%), Positives = 40/62 (64%)
Frame = +3
Query: 534 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 713
+GG ++ ++ ++E+I P ++P LG+ P+G+LLYGPPGTGKT L RAV +
Sbjct: 24 IGGNERALQALRELIIFPFRYPLEARTLGLKWPRGLLLYGPPGTGKTSLVRAVVQECDAH 83
Query: 714 FI 719
I
Sbjct: 84 LI 85
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains Pfam
profile PF00004: ATPase, AAA family
Length = 1122
Score = 71.7 bits (168), Expect = 4e-13
Identities = 35/80 (43%), Positives = 55/80 (68%), Gaps = 1/80 (1%)
Frame = +3
Query: 483 LVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPP 659
L+S +++ D T++ +G L+K +KE++ LP++ PELF + +P KG+LL+GPP
Sbjct: 805 LLSDVILPSDIDVTFDDIGALEKVKDILKELVMLPLQRPELFCKGELTKPCKGILLFGPP 864
Query: 660 GTGKTLLARAVAHHTECTFI 719
GTGKT+LA+AVA + FI
Sbjct: 865 GTGKTMLAKAVAKEADANFI 884
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 71.3 bits (167), Expect = 6e-13
Identities = 30/60 (50%), Positives = 44/60 (73%)
Frame = +3
Query: 516 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 695
D ++ +GGL + I ++KE++ P+ +PE F + I P+GVLL GPPGTGKTL+ARA+A
Sbjct: 377 DINFDDIGGLSEYINDLKEMVFFPLLYPEFFASYSITPPRGVLLCGPPGTGKTLIARALA 436
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 70.9 bits (166), Expect = 8e-13
Identities = 31/83 (37%), Positives = 49/83 (59%)
Frame = +3
Query: 471 KVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 650
K+ P ++ +VP +E VGG ++ ++ E +E P KH + F +G P G+L++
Sbjct: 705 KIRPSAMREVILEVPKVNWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPPSGILMF 764
Query: 651 GPPGTGKTLLARAVAHHTECTFI 719
GPPG KTL+ARAVA + F+
Sbjct: 765 GPPGCSKTLMARAVASEAKLNFL 787
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/61 (42%), Positives = 38/61 (62%)
Frame = +3
Query: 534 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 713
+GGL K+ ++++I+ L +LG+ KGVL++GPPGTGKT LAR A H+
Sbjct: 387 LGGLSKEYAILRDIIDSSSIKNSL-SSLGLRPTKGVLIHGPPGTGKTSLARTFARHSGVN 445
Query: 714 F 716
F
Sbjct: 446 F 446
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 70.1 bits (164), Expect = 1e-12
Identities = 34/69 (49%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Frame = +3
Query: 516 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAV 692
D + +GGL+ + + E++ LP+K PELF + P KGVLLYGPPGTGKT+LA+A+
Sbjct: 83 DVEFGSIGGLESIKQALYELVILPLKRPELFAYGKLLGPQKGVLLYGPPGTGKTMLAKAI 142
Query: 693 AHHTECTFI 719
A +E FI
Sbjct: 143 ARESEAVFI 151
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 69.3 bits (162), Expect = 2e-12
Identities = 33/58 (56%), Positives = 44/58 (75%)
Frame = +3
Query: 522 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 695
T+E V G+D+ ++ +E++E +K PE F ALG PKGVLL GPPGTGKTLLA+A+A
Sbjct: 221 TFEDVAGVDEAKQDFEEIVEF-LKTPEKFSALGAKIPKGVLLTGPPGTGKTLLAKAIA 277
>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 393
Score = 68.1 bits (159), Expect = 6e-12
Identities = 31/68 (45%), Positives = 46/68 (67%)
Frame = +3
Query: 513 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 692
P+ +E + GL+ K +KE + +P+K+P F+ L + KG+LL+GPPGTGKT+LA+AV
Sbjct: 107 PNIKWESIKGLENAKKLLKEAVVMPIKYPTYFNGL-LTPWKGILLFGPPGTGKTMLAKAV 165
Query: 693 AHHTECTF 716
A TF
Sbjct: 166 ATECNTTF 173
>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 384
Score = 68.1 bits (159), Expect = 6e-12
Identities = 31/68 (45%), Positives = 46/68 (67%)
Frame = +3
Query: 513 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 692
P+ +E + GL+ K +KE + +P+K+P F+ L + KG+LL+GPPGTGKT+LA+AV
Sbjct: 98 PNIKWESIKGLENAKKLLKEAVVMPIKYPTYFNGL-LTPWKGILLFGPPGTGKTMLAKAV 156
Query: 693 AHHTECTF 716
A TF
Sbjct: 157 ATECNTTF 164
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 66.9 bits (156), Expect = 1e-11
Identities = 28/67 (41%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
Frame = +3
Query: 522 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAH 698
T+ +G LD+ + ++E++ LP++ P+LF G+ +P +G+LL+GPPGTGKT++A+A+A+
Sbjct: 412 TFADIGSLDETKESLQELVMLPLRRPDLFKG-GLLKPCRGILLFGPPGTGKTMMAKAIAN 470
Query: 699 HTECTFI 719
+FI
Sbjct: 471 EAGASFI 477
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 66.9 bits (156), Expect = 1e-11
Identities = 32/58 (55%), Positives = 43/58 (74%)
Frame = +3
Query: 522 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 695
T++ V G+D+ ++ EV+E +K PE F A+G PKGVLL GPPGTGKTLLA+A+A
Sbjct: 225 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGAKIPKGVLLIGPPGTGKTLLAKAIA 281
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 66.9 bits (156), Expect = 1e-11
Identities = 29/67 (43%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
Frame = +3
Query: 522 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAH 698
T++ +G LD+ + ++E++ LP++ P+LF G+ +P +G+LL+GPPGTGKT+LA+A+A
Sbjct: 519 TFKDIGALDEIKESLQELVMLPLRRPDLFTG-GLLKPCRGILLFGPPGTGKTMLAKAIAK 577
Query: 699 HTECTFI 719
+FI
Sbjct: 578 EAGASFI 584
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 66.9 bits (156), Expect = 1e-11
Identities = 29/67 (43%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
Frame = +3
Query: 522 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAH 698
T++ +G LD+ + ++E++ LP++ P+LF G+ +P +G+LL+GPPGTGKT+LA+A+A
Sbjct: 514 TFKDIGALDEIKESLQELVMLPLRRPDLFTG-GLLKPCRGILLFGPPGTGKTMLAKAIAK 572
Query: 699 HTECTFI 719
+FI
Sbjct: 573 EAGASFI 579
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 66.9 bits (156), Expect = 1e-11
Identities = 32/58 (55%), Positives = 43/58 (74%)
Frame = +3
Query: 522 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 695
T++ V G+D+ ++ EV+E +K PE F A+G PKGVLL GPPGTGKTLLA+A+A
Sbjct: 218 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIA 274
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 66.5 bits (155), Expect = 2e-11
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Frame = +3
Query: 516 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAV 692
D + +GGL+ + + E++ LP+K PELF + P KGVLLYGPPGTGKT+LA+A+
Sbjct: 80 DVEFGSIGGLETIKQALYELVILPLKRPELFAYGKLLGPQKGVLLYGPPGTGKTMLAKAI 139
Query: 693 AHHTECTFI 719
A + FI
Sbjct: 140 AKESGAVFI 148
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/70 (42%), Positives = 42/70 (60%)
Frame = +3
Query: 510 VPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 689
VPD ++ VGGLD + I P+K P+++ A G+ G LLYGPPG GKTL+A+A
Sbjct: 522 VPDVKWDDVGGLDHLRLQFNRYIVRPIKKPDIYKAFGVDLETGFLLYGPPGCGKTLIAKA 581
Query: 690 VAHHTECTFI 719
A+ F+
Sbjct: 582 AANEAGANFM 591
Score = 61.7 bits (143), Expect = 5e-10
Identities = 27/74 (36%), Positives = 43/74 (58%)
Frame = +3
Query: 501 VEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 680
VE T++ GG+ K + E++ + P+ +PE F +G+ P G+L +GPPG GKT L
Sbjct: 224 VEGTKGPTFKDFGGIKKILDELEMNVLFPILNPEPFKKIGVKPPSGILFHGPPGCGKTKL 283
Query: 681 ARAVAHHTECTFIR 722
A A+A+ F +
Sbjct: 284 ANAIANEAGVPFYK 297
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 66.1 bits (154), Expect = 2e-11
Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Frame = +3
Query: 525 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHH 701
+E +G L+ K + E++ LP++ PELF + +P KG+LL+GPPGTGKTLLA+A+A
Sbjct: 350 FEDIGALEDVKKALNELVILPMRRPELFARGNLLRPCKGILLFGPPGTGKTLLAKALATE 409
Query: 702 TECTFI 719
FI
Sbjct: 410 AGANFI 415
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 65.7 bits (153), Expect = 3e-11
Identities = 34/66 (51%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Frame = +3
Query: 504 EKVPDS--TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 677
++VP++ T+ V G D+ E++EV++ +K+P+ + ALG PKG LL GPPGTGKTL
Sbjct: 240 QEVPETGVTFGDVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTL 298
Query: 678 LARAVA 695
LARAVA
Sbjct: 299 LARAVA 304
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 65.7 bits (153), Expect = 3e-11
Identities = 37/104 (35%), Positives = 62/104 (59%), Gaps = 7/104 (6%)
Frame = +3
Query: 429 LRNESYTLHKILPNKV--DPLVSLMMVEKVPDS----TYEMVGGLDKQIKEIKEVIELPV 590
++NE+ + K L + V + ++ + +P S ++ +G L+ +KE++ LP+
Sbjct: 911 IQNENKSTKKSLKDVVTENEFEKKLLSDVIPPSDIGVSFSDIGALENVKDTLKELVMLPL 970
Query: 591 KHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTECTFI 719
+ PELF + +P KG+LL+GPPGTGKT+LA+AVA FI
Sbjct: 971 QRPELFGKGQLTKPTKGILLFGPPGTGKTMLAKAVATEAGANFI 1014
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 65.3 bits (152), Expect = 4e-11
Identities = 28/54 (51%), Positives = 43/54 (79%)
Frame = +3
Query: 534 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 695
V G+D+ + E++E+++ +K+P+LFD +GI P GVLL GPPG GKTL+A+A+A
Sbjct: 432 VAGIDEAVDELQELVKY-LKNPDLFDKMGIKPPHGVLLEGPPGCGKTLVAKAIA 484
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 65.3 bits (152), Expect = 4e-11
Identities = 32/66 (48%), Positives = 46/66 (69%)
Frame = +3
Query: 522 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 701
T+ V G+D+ +E++E++E +++PE + LG P+GVLL G PGTGKTLLA+AVA
Sbjct: 323 TFADVAGVDEAKEELEEIVEF-LRNPEKYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGE 381
Query: 702 TECTFI 719
E FI
Sbjct: 382 AEVPFI 387
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 65.3 bits (152), Expect = 4e-11
Identities = 30/66 (45%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Frame = +3
Query: 525 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHH 701
++ +G L+ K + E++ LP++ PELF + +P KG+LL+GPPGTGKTLLA+A+A
Sbjct: 149 FDDIGALEHVKKTLNELVILPMRRPELFTRGNLLRPCKGILLFGPPGTGKTLLAKALATE 208
Query: 702 TECTFI 719
FI
Sbjct: 209 AGANFI 214
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 64.5 bits (150), Expect = 7e-11
Identities = 31/66 (46%), Positives = 47/66 (71%)
Frame = +3
Query: 522 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 701
T+ V G+D+ +E++E++E +K+P+ + LG P+GVLL G PGTGKTLLA+AVA
Sbjct: 327 TFADVAGVDEAKEELEEIVEF-LKNPDRYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGE 385
Query: 702 TECTFI 719
++ FI
Sbjct: 386 SDVPFI 391
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 64.5 bits (150), Expect = 7e-11
Identities = 27/56 (48%), Positives = 42/56 (75%)
Frame = +3
Query: 525 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 692
++ V GL+ + +KEV+ +P+ +PE FD LG+ P+G+LL+G PGTGKTL+ RA+
Sbjct: 718 WDSVAGLEGVTQCMKEVVLIPLLYPEFFDNLGLTPPRGILLHGHPGTGKTLVVRAL 773
>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
domain
Length = 487
Score = 64.5 bits (150), Expect = 7e-11
Identities = 31/87 (35%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Frame = +3
Query: 459 ILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-K 635
+ +K+ +++ +V++ P ++ V GL+ + + E++ LP K +LF G+ +P +
Sbjct: 193 VYDDKLVEMINTTIVDRSPSVKWDDVAGLNGAKQALLEMVILPAKRRDLFT--GLRRPAR 250
Query: 636 GVLLYGPPGTGKTLLARAVAHHTECTF 716
G+LL+GPPG GKT+LA+AVA ++ TF
Sbjct: 251 GLLLFGPPGNGKTMLAKAVASESQATF 277
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 64.5 bits (150), Expect = 7e-11
Identities = 33/66 (50%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Frame = +3
Query: 504 EKVPDS--TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 677
++VP++ ++ V G D+ E++EV++ +K+P+ + ALG PKG LL GPPGTGKTL
Sbjct: 252 QEVPETGVSFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTL 310
Query: 678 LARAVA 695
LARAVA
Sbjct: 311 LARAVA 316
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 63.3 bits (147), Expect = 2e-10
Identities = 34/72 (47%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Frame = +3
Query: 498 MVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKT 674
+++ P ++ V GL + + ++E + LP+ PE F GI +P KGVL++GPPGTGKT
Sbjct: 229 VLDSTPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQ--GIRRPWKGVLMFGPPGTGKT 286
Query: 675 LLARAVAHHTEC 710
LLA+AVA TEC
Sbjct: 287 LLAKAVA--TEC 296
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 59.7 bits (138), Expect = 2e-09
Identities = 30/58 (51%), Positives = 41/58 (70%)
Frame = +3
Query: 522 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 695
T++ V G D +E++EV+E +K+P F LG PKG+LL G PGTGKTLLA+A+A
Sbjct: 360 TFKDVKGCDDAKQELEEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIA 416
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 59.3 bits (137), Expect = 3e-09
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Frame = +3
Query: 498 MVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKT 674
+V + P+ + V GL+ + ++E + LPVK P+ F G +P + LLYGPPGTGK+
Sbjct: 122 IVREKPNIKWSDVAGLESAKQALQEAVILPVKFPQFFT--GKRRPWRAFLLYGPPGTGKS 179
Query: 675 LLARAVAHHTECTF 716
LA+AVA + TF
Sbjct: 180 YLAKAVATEADSTF 193
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 58.8 bits (136), Expect = 3e-09
Identities = 29/65 (44%), Positives = 42/65 (64%)
Frame = +3
Query: 525 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 704
++ V G D+ +EI E + +K+P+ ++ LG PKG LL GPPGTGKTLLA+A A +
Sbjct: 321 FKDVAGCDEAKQEIMEFVHF-LKNPKKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES 379
Query: 705 ECTFI 719
F+
Sbjct: 380 GVPFL 384
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 58.4 bits (135), Expect = 4e-09
Identities = 28/58 (48%), Positives = 42/58 (72%)
Frame = +3
Query: 522 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 695
T++ G + +E++E++ + +K+ E F GI PKGVLL+GPPGTGKTLLA+A+A
Sbjct: 314 TFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIA 370
>At2g26140.1 68415.m03137 FtsH protease, putative contains
similarity to YME1 GI:295582, a member of the
ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
genes from [Saccharomyces cerevisiae]
Length = 717
Score = 58.4 bits (135), Expect = 4e-09
Identities = 28/54 (51%), Positives = 39/54 (72%)
Frame = +3
Query: 534 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 695
V G+D+ E++E++ ++ P+ F LG PKGVLL GPPGTGKT+LARA+A
Sbjct: 229 VKGVDEAKAELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIA 281
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 1025
Score = 57.2 bits (132), Expect = 1e-08
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Frame = +3
Query: 522 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVA 695
T++ +G L+ +KE++ LP + PELF + +P G+LL+GP GTGKT+LA+AVA
Sbjct: 733 TFDDIGALENVKDTLKELVMLPFQWPELFCKGQLTKPCNGILLFGPSGTGKTMLAKAVA 791
>At3g27120.1 68416.m03393 spastin ATPase, putative similar to
SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus];
contains Pfam domain, PF00004: ATPase, AAA family
Length = 287
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/73 (35%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Frame = +3
Query: 501 VEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTL 677
+++ P+ ++ + GL+ K + E++ P+ P++F G P KG+LL+GPPGTGKT+
Sbjct: 1 MDRDPNVRWDDIAGLEHAKKCVTEMVIWPLLRPDIFK--GCRSPGKGLLLFGPPGTGKTM 58
Query: 678 LARAVAHHTECTF 716
+ +A+A + TF
Sbjct: 59 IGKAIAGEAKATF 71
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 56.0 bits (129), Expect = 2e-08
Identities = 27/65 (41%), Positives = 42/65 (64%)
Frame = +3
Query: 525 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 704
++ V G ++ +EI E + +++P+ ++ LG PKG LL GPPGTGKTLLA+A A +
Sbjct: 326 FKDVAGCEEAKQEIMEFVHF-LQNPKKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES 384
Query: 705 ECTFI 719
F+
Sbjct: 385 AVPFL 389
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 55.2 bits (127), Expect = 4e-08
Identities = 29/72 (40%), Positives = 42/72 (58%)
Frame = +3
Query: 501 VEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 680
+E+ D + V GL K E++E+++ H E++ G+ P G+LL GPPG GKTLL
Sbjct: 401 LERGVDVKFTDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVKIPGGILLCGPPGVGKTLL 459
Query: 681 ARAVAHHTECTF 716
A+AVA F
Sbjct: 460 AKAVAGEAGVNF 471
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/65 (44%), Positives = 36/65 (55%)
Frame = +3
Query: 525 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 704
+E VGG+ IKE+IELP K P++F + VLLYGPPG GKT + A A
Sbjct: 843 WEDVGGVTDIKNAIKEMIELPSKFPKIFAKSPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902
Query: 705 ECTFI 719
FI
Sbjct: 903 SLRFI 907
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +3
Query: 606 FDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE 707
F I P +L+YGPPG+GKT+LARA A + E
Sbjct: 585 FSKFKIPSPGHILIYGPPGSGKTILARAAAKYFE 618
>At3g02450.1 68416.m00232 cell division protein ftsH, putative
similar to SWISS-PROT:P46469 cell division protein ftsH
homolog [Lactococcus lactis]; contains Pfam domain,
PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
diverse cellular 'A'ctivities)
Length = 622
Score = 53.2 bits (122), Expect = 2e-07
Identities = 29/63 (46%), Positives = 39/63 (61%)
Frame = +3
Query: 507 KVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 686
K P ++ V G+D E+ E++ ++ + LG P+GVLL GPPGTGKTLLAR
Sbjct: 327 KNPTVGFDDVEGVDSAKDELVEIVSC-LQGSINYKKLGARLPRGVLLVGPPGTGKTLLAR 385
Query: 687 AVA 695
AVA
Sbjct: 386 AVA 388
>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
SP|P18708 Vesicular-fusion protein NSF
(N-ethylmaleimide-sensitive fusion protein)
(NEM-sensitive fusion protein) {Cricetulus griseus};
contains Pfam profiles PF00004: ATPase AAA family,
PF02359: Cell division protein 48 (CDC48) N-terminal
domain; contains non-consensus AT-AC splice sites at
intron 2
Length = 742
Score = 49.2 bits (112), Expect = 3e-06
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +3
Query: 534 VGGLDKQIKEI-KEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 692
+GGL + +I + V P + LGI KG+LL+GPPGTGKTL+AR +
Sbjct: 217 IGGLGAEFADIFRRAFASRVFPPHVTSRLGIKHVKGMLLFGPPGTGKTLMARQI 270
>At5g17760.2 68418.m02083 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 341
Score = 47.6 bits (108), Expect = 8e-06
Identities = 22/61 (36%), Positives = 38/61 (62%)
Frame = +3
Query: 519 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 698
ST+E + D +++ E ++ ++ E + +G A +G LLYGPPGTGK+ L A+A+
Sbjct: 216 STFETMAMEDDLKRDVIEDLDRFIRRKEFYKRVGKAWKRGYLLYGPPGTGKSSLVAAMAN 275
Query: 699 H 701
+
Sbjct: 276 Y 276
>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 505
Score = 47.6 bits (108), Expect = 8e-06
Identities = 22/61 (36%), Positives = 38/61 (62%)
Frame = +3
Query: 519 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 698
ST+E + D +++ E ++ ++ E + +G A +G LLYGPPGTGK+ L A+A+
Sbjct: 216 STFETMAMEDDLKRDVIEDLDRFIRRKEFYKRVGKAWKRGYLLYGPPGTGKSSLVAAMAN 275
Query: 699 H 701
+
Sbjct: 276 Y 276
>At3g50930.1 68416.m05576 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 576
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Frame = +3
Query: 519 STYEMVGGLDKQIK-EIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 695
ST++ + +D +K + E ++ VK + + +G A +G LLYGPPGTGK+ L A+A
Sbjct: 262 STFKTLA-MDSDVKTSVMEDLDKFVKRRDFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMA 320
Query: 696 HH 701
+H
Sbjct: 321 NH 322
>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 609
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 8/73 (10%)
Frame = +3
Query: 504 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDAL--GIA------QPKGVLLYGPP 659
+ + + +++ + G D+Q +EI++ I + + PE++D + G +P+ VL GPP
Sbjct: 311 DSMDEISWDNIAGYDQQKREIEDTILMALHSPEVYDDIVRGTRSKFESNRPRAVLFEGPP 370
Query: 660 GTGKTLLARAVAH 698
GTGKT AR +A+
Sbjct: 371 GTGKTSCARVIAN 383
>At3g50940.1 68416.m05577 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Frame = +3
Query: 519 STYEMVGGLDKQIKE-IKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 695
ST+ + LD ++K+ + E ++ V+ + +G A +G LLYGPPGTGK+ L A+A
Sbjct: 210 STFRTLA-LDPEVKKNLVEDLDRFVQRKGFYGRVGKAWKRGYLLYGPPGTGKSSLIAAIA 268
Query: 696 HH 701
+H
Sbjct: 269 NH 270
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/63 (36%), Positives = 36/63 (57%)
Frame = +3
Query: 507 KVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 686
K P + ++ +EI EV+ +++P+ F +G P+GVL+ G GTGKT LA
Sbjct: 417 KNPPIPLKNFASIESMREEINEVVAF-LQNPKAFQEMGARAPRGVLIVGERGTGKTSLAL 475
Query: 687 AVA 695
A+A
Sbjct: 476 AIA 478
>At2g18193.1 68415.m02117 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 495
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/61 (37%), Positives = 37/61 (60%)
Frame = +3
Query: 519 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 698
ST++ + K+I + +E +K E + +G A +G LLYGPPGTGK+ L A+A+
Sbjct: 206 STFDTLAMDPNAKKKIIDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 265
Query: 699 H 701
+
Sbjct: 266 Y 266
>At2g18190.1 68415.m02116 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 494
Score = 44.8 bits (101), Expect = 6e-05
Identities = 24/61 (39%), Positives = 37/61 (60%)
Frame = +3
Query: 519 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 698
ST+E + K+I + +E +K E + +G A +G LLYGPPGTGK+ L A+A+
Sbjct: 207 STFETLAMDPGAKKKIIDDMERFLKRREFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 266
Query: 699 H 701
+
Sbjct: 267 Y 267
>At1g43910.1 68414.m05066 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = +3
Query: 591 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 701
K + F ++G A +G LLYGPPGTGK+ + A+A+H
Sbjct: 226 KGKDFFKSVGRAWKRGYLLYGPPGTGKSSMVAAIANH 262
>At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1,
Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens,
EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849
contains Pfam profile: ATPase family PF00004
gene_id:K17E7.100 contains Pfam profile: ATPase family
PF00004
Length = 533
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = +3
Query: 519 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 698
ST++ + D + + E ++ V + + +G A +G LLYGPPGTGK+ L A+A+
Sbjct: 208 STFDTMAMNDDLKRSMIEDLDRFVGRKDFYKRVGKAWKRGYLLYGPPGTGKSSLVAAMAN 267
Query: 699 H 701
+
Sbjct: 268 Y 268
>At5g17730.1 68418.m02079 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 470
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/61 (29%), Positives = 36/61 (59%)
Frame = +3
Query: 519 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 698
ST++ + ++ + + ++ ++ + + +G +G LLYGPPGTGKT L A+A+
Sbjct: 208 STFDTMAMNEELKRSVMGDLDRFIRRKDFYKRVGKPWKRGYLLYGPPGTGKTSLVAAIAN 267
Query: 699 H 701
+
Sbjct: 268 Y 268
>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 500
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/63 (31%), Positives = 37/63 (58%)
Frame = +3
Query: 519 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 698
+T++ + + + +EIK + K + + +G A +G LL+GPPGTGK+ + A+A+
Sbjct: 203 ATFDTLAMEENKKEEIKSDLIKFSKSKDYYKKIGKAWKRGYLLFGPPGTGKSTMIAAMAN 262
Query: 699 HTE 707
E
Sbjct: 263 FLE 265
>At3g28570.1 68416.m03567 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +3
Query: 600 ELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 698
E +D +G A +G LLYGPPGTGK+ + A+A+
Sbjct: 226 EYYDRIGKAWKRGYLLYGPPGTGKSTMIAAMAN 258
>At5g17750.1 68418.m02081 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 392
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +3
Query: 519 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 698
ST+ + K + E ++ +K + + +G A + LYGPPGTGK+ L A+A+
Sbjct: 183 STFHTMAMTPKLKSSVMEDLDRFIKRKDYYKRVGKAWKRSYFLYGPPGTGKSSLVAAMAN 242
Query: 699 H 701
+
Sbjct: 243 Y 243
>At1g79560.1 68414.m09275 FtsH protease, putative contains
similarity to chloroplast FtsH protease GI:5804782 from
[Nicotiana tabacum]
Length = 1008
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/59 (33%), Positives = 34/59 (57%)
Frame = +3
Query: 543 LDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFI 719
L + ++ + + + + +P + +A +GVLL GPPGTGKTL AR +A + F+
Sbjct: 497 LGGDVWDLLDELMIYMGNPMQYYEKDVAFVRGVLLSGPPGTGKTLFARTLAKESGLPFV 555
>At4g05380.1 68417.m00820 AAA-type ATPase family protein contains
similarity to mitochondrial ATPase (AAA family) Bcs1p,
Saccharomyces cerevisiae, Swiss Prot:P32839
Length = 248
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +3
Query: 600 ELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 698
+ F +G A +G LLYGPPGTGK+ L A+A+
Sbjct: 21 DFFKTVGRAWKRGYLLYGPPGTGKSSLVAAIAN 53
>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 600 ELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 701
E + +G A +G LL+GPPGTGK+ + A+A+H
Sbjct: 226 EYYKKIGKAWKRGYLLHGPPGTGKSTMIAAMANH 259
>At4g30250.1 68417.m04301 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 512
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/61 (34%), Positives = 33/61 (54%)
Frame = +3
Query: 519 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 698
ST++ + ++ K I E + + G A +G LLYGPPGTGK+ L A+A+
Sbjct: 201 STFDTLAMDPEKKKRIMEDLREFANGQGFYQKTGRAWKRGYLLYGPPGTGKSSLIAAMAN 260
Query: 699 H 701
+
Sbjct: 261 Y 261
>At3g28520.1 68416.m03562 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 478
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = +3
Query: 519 STYEMVG-GLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 695
+++E +G LDK+ +EIK+ + K + + + +G LL+GPPGTGK+ + A+A
Sbjct: 191 ASFETLGMDLDKK-EEIKKDLIKFTKGKDYYRKVAKPWKRGYLLFGPPGTGKSTMISAIA 249
Query: 696 HHTE 707
+ E
Sbjct: 250 NFLE 253
>At1g21690.1 68414.m02714 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 339
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +3
Query: 558 KEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 698
K++K+V L + L A +L YGPPGTGKT A A+AH
Sbjct: 18 KQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAH 64
>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 520
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/61 (31%), Positives = 36/61 (59%)
Frame = +3
Query: 519 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 698
ST+E + ++ ++I + ++ + + G A +G LLYGPPGTGK+ + A+A+
Sbjct: 200 STFETLAMDPRKKQQIMDDLKDFAEGQVFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMAN 259
Query: 699 H 701
+
Sbjct: 260 Y 260
>At5g40010.1 68418.m04852 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 514
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/63 (31%), Positives = 36/63 (57%)
Frame = +3
Query: 519 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 698
+T++ + K+ +EIK + + + +G A +G LL+GPPGTGK+ + A+A+
Sbjct: 206 ATFDTLAMEYKKKEEIKNDLIKFSNSKDYYKKIGKAWKRGYLLFGPPGTGKSTMIAAMAN 265
Query: 699 HTE 707
E
Sbjct: 266 LLE 268
>At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1
nuclear gene encoding mitochondrial protein - Homo
sapiens, EMBL:AF026849 contains Pfam profile: ATPase
family PF00004
Length = 470
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +3
Query: 600 ELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 698
E + +G A +G LLYGPPGTGK+ + A+A+
Sbjct: 231 EYYKKIGKAWKRGYLLYGPPGTGKSTMISAMAN 263
>At4g25835.1 68417.m03716 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 506
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/61 (31%), Positives = 36/61 (59%)
Frame = +3
Query: 519 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 698
ST++ + + ++I E ++ + ++ G A +G LLYGPPGTGK+ + A+A+
Sbjct: 200 STFDTLAMDPVKKQQIMEDLKDFAECQSFYERTGRAWKRGYLLYGPPGTGKSSMIAAMAN 259
Query: 699 H 701
+
Sbjct: 260 Y 260
>At3g28610.1 68416.m03571 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 473
Score = 37.5 bits (83), Expect = 0.009
Identities = 19/60 (31%), Positives = 34/60 (56%)
Frame = +3
Query: 519 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 698
+T+E + K+ ++I + + + +G A +G LLYGPPGTGK+ + A+A+
Sbjct: 199 ATFETLAMDPKKKEQILNDLAAFNNGKDYYKKIGKAWKRGYLLYGPPGTGKSTMIAAMAN 258
>At3g28540.1 68416.m03564 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 510
Score = 37.1 bits (82), Expect = 0.012
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +3
Query: 519 STYEMVG-GLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 695
+T+E + L+K+ K++I+ K + + +G +G LL+GPPGTGK+ + A+A
Sbjct: 202 ATFETLAMDLEKKEGMKKDLIKF-TKGKDYYRKVGKPWKRGYLLFGPPGTGKSTMISAMA 260
Query: 696 HHTE 707
+ E
Sbjct: 261 NFLE 264
>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 530
Score = 37.1 bits (82), Expect = 0.012
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +3
Query: 519 STYEMVGGLDKQIKE-IKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 695
+T+E + +D + KE IK+ + K + + +G +G LL+GPPGTGK+ + A+A
Sbjct: 206 ATFETLA-MDPEKKEGIKKDLIKFSKGKDYYKKVGKPWKRGYLLFGPPGTGKSTMIAAIA 264
Query: 696 H 698
+
Sbjct: 265 N 265
>At5g16930.1 68418.m01984 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 644
Score = 35.5 bits (78), Expect = 0.036
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3
Query: 633 KGVLLYGPPGTGKTLLARAVAHHT 704
+ +L YGPPGTGKT+ AR +A +
Sbjct: 399 RNILFYGPPGTGKTMAARELARRS 422
>At1g21690.2 68414.m02715 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 327
Score = 35.5 bits (78), Expect = 0.036
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +3
Query: 639 VLLYGPPGTGKTLLARAVAH 698
+L YGPPGTGKT A A+AH
Sbjct: 33 MLFYGPPGTGKTTTALAIAH 52
>At1g08270.2 68414.m00912 expressed protein low similarity to
SP|P46467 SKD1 protein (Vacuolar sorting protein 4b)
{Mus musculus}
Length = 132
Score = 35.5 bits (78), Expect = 0.036
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +3
Query: 498 MVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGV 641
++ + P+ + +V GL+ + +KE + LPV P+ F A I P+ V
Sbjct: 83 IIREKPNVKWTVVAGLESAKQALKEAVILPVNFPQFFTARAIYDPRDV 130
>At4g36580.1 68417.m05193 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 620
Score = 35.1 bits (77), Expect = 0.047
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +3
Query: 633 KGVLLYGPPGTGKTLLARAVA 695
+ ++ YGPPGTGKT++AR +A
Sbjct: 371 RNMMFYGPPGTGKTMVAREIA 391
>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 636
Score = 35.1 bits (77), Expect = 0.047
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +3
Query: 633 KGVLLYGPPGTGKTLLARAVA 695
+ ++ YGPPGTGKT++AR +A
Sbjct: 386 RNMMFYGPPGTGKTMVAREIA 406
>At3g03060.1 68416.m00302 AAA-type ATPase family protein contains a
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 639
Score = 34.7 bits (76), Expect = 0.063
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +3
Query: 633 KGVLLYGPPGTGKTLLARAVA 695
+ +LL+GPPGTGKT+ AR +A
Sbjct: 398 RNILLHGPPGTGKTMAARELA 418
>At2g46620.1 68415.m05815 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 491
Score = 34.7 bits (76), Expect = 0.063
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +3
Query: 561 EIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 698
++K +E +K + ++ LG + LLYGP GTGK+ A+A+
Sbjct: 208 KVKSDLESFLKGKQYYNRLGRVWKRSYLLYGPSGTGKSSFVAAMAN 253
>At3g05780.1 68416.m00649 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 924
Score = 34.3 bits (75), Expect = 0.083
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 618 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 722
G +Q K + L GPPG GKT + R++A + F R
Sbjct: 436 GTSQGKIICLSGPPGVGKTSIGRSIARALDRKFFR 470
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 34.3 bits (75), Expect = 0.083
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +3
Query: 555 IKEIKEVIELPVKHPELFD--ALGIAQPKGVLLYGPPGTGKTLLARAVA 695
+ E E+ + + F+ +L ++Q + VLLYGP G+GK+ L R +A
Sbjct: 326 VNSFSEPFEIHSRVKKSFEMVSLAVSQKRPVLLYGPSGSGKSALIRKLA 374
>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
almost identical to Lon protease homolog 2
mitochondrial precursor SP:P93655, GI:1848290 from
[Arabidopsis thaliana]
Length = 940
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 618 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 722
G +Q K + L GPPG GKT + R++A F R
Sbjct: 453 GTSQGKIICLSGPPGVGKTSIGRSIARALNRKFFR 487
>At4g24710.1 68417.m03536 AAA-type ATPase family protein similar to
HPV16 E1 protein binding protein [Homo sapiens]
gi|2232019|gb|AAB64095; contains Pfam domain, PF00004:
ATPase, AAA family ('A'TPases 'A'ssociated with diverse
cellular 'A'ctivities)
Length = 467
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +3
Query: 639 VLLYGPPGTGKTLLARAVA 695
+LL+GPPGTGKT L +A+A
Sbjct: 205 ILLHGPPGTGKTSLCKALA 223
>At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1226
Score = 33.1 bits (72), Expect = 0.19
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +3
Query: 540 GLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFI 719
GL ++++E+KE ++L + + LG+ G PG GKT LAR + C F+
Sbjct: 211 GLKQRLEELKEKLDLDCEETRI---LGVV--------GMPGIGKTTLAREIYETLRCKFL 259
Query: 720 R 722
R
Sbjct: 260 R 260
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar
to pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 33.1 bits (72), Expect = 0.19
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +3
Query: 603 LFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTE 707
L D GI +P + LL GPPG+GK+ L +A++ TE
Sbjct: 162 LNDVSGIIKPGRLTLLLGPPGSGKSTLLKALSGKTE 197
>At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding
subunit ClpX1 (CLPX) identical to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 579
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 627 QPKGVLLYGPPGTGKTLLARAVAHHTECTFI 719
+ +LL GP G+GKTLLA+ +A F+
Sbjct: 222 EKSNILLMGPTGSGKTLLAKTLARFVNVPFV 252
>At2g37280.1 68415.m04573 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1413
Score = 32.3 bits (70), Expect = 0.33
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 603 LFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTE 707
L D GI P + LL GPPG GKT L +A++ + E
Sbjct: 155 LTDVSGIISPGRLTLLLGPPGCGKTTLLKALSGNLE 190
>At5g47010.1 68418.m05794 RNA helicase, putative similar to type 1
RNA helicase pNORF1 [Homo sapiens] GI:1885356
Length = 1254
Score = 31.9 bits (69), Expect = 0.44
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 642 LLYGPPGTGKTLLARAVAHH 701
L+ GPPGTGKT+ + A+ +H
Sbjct: 507 LIQGPPGTGKTVTSAAIVYH 526
>At1g77470.1 68414.m09021 replication factor C 36 kDA, putative
similar to SWISS-PROT:P40937 activator 1 36 kDa subunit
(Replication factor C 36 kDa subunit, A1 36 kDa subunit,
RF-C 36 kDa subunit, RFC36) [Homo sapiens]
Length = 369
Score = 31.9 bits (69), Expect = 0.44
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +3
Query: 639 VLLYGPPGTGKTLLARAVA 695
+LLYGPPGTGKT AVA
Sbjct: 75 LLLYGPPGTGKTSTILAVA 93
>At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding
subunit ClpX, putative similar to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 656
Score = 31.9 bits (69), Expect = 0.44
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 639 VLLYGPPGTGKTLLARAVAHHTECTFI 719
VLL GP G+GKTLLA+ +A F+
Sbjct: 311 VLLMGPTGSGKTLLAKTLARLVNVPFV 337
>At5g22330.1 68418.m02605 TATA box-binding protein-interacting
protein-related similar to TATA box-binding
protein-interacting protein SP:O35753 from [ Mus
musculus]
Length = 458
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +3
Query: 633 KGVLLYGPPGTGKTLLARAVA 695
K +LL GPPGTGKT LA ++
Sbjct: 67 KALLLAGPPGTGKTALALGIS 87
>At2g36380.1 68415.m04464 ABC transporter family protein related to
multi drug resistance proteins and P-glycoproteins
Length = 1453
Score = 31.5 bits (68), Expect = 0.58
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +3
Query: 519 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGV-LLYGPPGTGKTLLARAVA 695
+T E + GL + K IE+ L D GI +P + LL GPP +GKT L +A+A
Sbjct: 167 NTIESILGLFHLLPSKKRKIEI------LKDISGIIKPSRMTLLLGPPSSGKTTLLQALA 220
>At3g05790.1 68416.m00650 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 942
Score = 31.1 bits (67), Expect = 0.77
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 618 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 722
G +Q K + L GP G GKT + R++A + F R
Sbjct: 445 GTSQGKIICLSGPTGVGKTSIGRSIARALDRKFFR 479
>At1g15520.1 68414.m01867 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1423
Score = 31.1 bits (67), Expect = 0.77
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 546 DKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVA 695
DK + + V K L D GI +P + LL GPP +GKT L A+A
Sbjct: 151 DKFLNTLHLVPNRKKKFTILNDVSGIVKPGRMALLLGPPSSGKTTLLLALA 201
>At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding
subunit ClpX, putative similar to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]; non-consensus splice donor GC at exon 4;
non-consensus splice donor AA at exon 7
Length = 606
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +3
Query: 639 VLLYGPPGTGKTLLARAVAHHTECTF 716
VLL GP G+GKTLLA+ +A F
Sbjct: 265 VLLLGPTGSGKTLLAKTLARIVNVPF 290
>At1g66950.1 68414.m07612 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1454
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +3
Query: 603 LFDALGIAQPKGV-LLYGPPGTGKTLLARAVA 695
L D GI +P + LL GPP +GKT L +A+A
Sbjct: 191 LKDISGIVKPSRMTLLLGPPSSGKTTLLQALA 222
>At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP101,
putative similar to heat shock protein 101 GI:6715468
GB:AAF26423 from [Arabidopsis thaliana]
Length = 623
Score = 30.3 bits (65), Expect = 1.4
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = +3
Query: 516 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIA---QPKGVLLY-GPPGTGKTLLA 683
D +E V G D+ +K + I L +G+ QP G L+ GP G GKT LA
Sbjct: 530 DKLHERVVGQDEAVKAVAAAI--------LRSRVGLGRPQQPSGSFLFLGPTGVGKTELA 581
Query: 684 RAVA 695
+A+A
Sbjct: 582 KALA 585
>At2g16870.1 68415.m01941 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1109
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/60 (31%), Positives = 35/60 (58%)
Frame = +3
Query: 513 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 692
P S ++ + G++ +KE++ +++ FD G+ K V ++GP G GKT +ARA+
Sbjct: 178 PSSDFDGMVGIEAHLKEMEVLLD--------FDYDGV---KIVGIFGPAGIGKTTIARAL 226
>At4g15236.1 68417.m02335 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1388
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +3
Query: 618 GIAQPKGV-LLYGPPGTGKTLLARAVA 695
GI +PK + LL GPPG GKT L A++
Sbjct: 157 GIIRPKRMTLLLGPPGCGKTTLLLALS 183
>At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam
profile: ATPase family PF00004
Length = 440
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +3
Query: 519 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 698
S++E + + + + + I+L + + + +G + LL+G PG GKT L A+A
Sbjct: 162 SSFETIVMKEDLKRRLIDDIDLFISKEDFYKRVGRHWMRYYLLHGLPGAGKTSLVAAIAK 221
Query: 699 H 701
+
Sbjct: 222 Y 222
>At2g29940.1 68415.m03642 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1426
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +3
Query: 603 LFDALGIAQP-KGVLLYGPPGTGKTLLARAVA 695
L D GI +P + LL GPPG+GK+ L A+A
Sbjct: 176 LKDISGIIKPGRMTLLLGPPGSGKSTLLLALA 207
>At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1195
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/70 (30%), Positives = 35/70 (50%)
Frame = +3
Query: 513 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 692
P++ E+VG L +++KE+KE ++L K + LG+ PG GKT L + +
Sbjct: 214 PENQIELVG-LSQRLKELKEKLDLSRKETRIVGVLGM-----------PGIGKTTLVKRL 261
Query: 693 AHHTECTFIR 722
+ F R
Sbjct: 262 YDEWKHNFQR 271
>At1g63880.1 68414.m07234 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1017
Score = 29.9 bits (64), Expect = 1.8
Identities = 24/86 (27%), Positives = 43/86 (50%)
Frame = +3
Query: 435 NESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDA 614
NE+ + KI + +D L P ++ + G++ ++EIK +++L D
Sbjct: 160 NEAIMIEKIARDVLDKL------NATPSRDFDGMVGIEAHLREIKSLLDL--------DN 205
Query: 615 LGIAQPKGVLLYGPPGTGKTLLARAV 692
+ + K V + GP G GKT +ARA+
Sbjct: 206 VEV---KIVAIAGPAGIGKTTIARAL 228
>At1g60700.1 68414.m06833 forkhead-associated domain-containing
protein / FHA domain-containing protein contains
similarity to nucleolar protein GI:2384719 from [Mus
musculus]
Length = 525
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 375 DLDKNVDINDVTANCRVALRNES-YTLHKILPNKVDPL 485
DLD N DI D + R LR ES + ++ N DPL
Sbjct: 64 DLDNNADIGDGDEDIRNCLRPESDFWFKNLMDNPYDPL 101
>At1g15210.1 68414.m01818 ABC transporter family protein Similar to
gb|Z70524 GI:1514643 PDR5-like ABC transporter from
Spirodela polyrrhiza and is a member of the PF|00005 ABC
transporter family. ESTs gb|N97039 and gb|T43169 come
from this gene
Length = 1442
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 603 LFDALGIAQPKGV-LLYGPPGTGKTLLARAVA 695
L D GI +P + LL GPP +GKT L A+A
Sbjct: 185 LKDVSGIVKPSRMTLLLGPPSSGKTTLLLALA 216
>At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 818
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 615 LGIAQPKGVLLYGPPGTGKT 674
+G+++ VL+ GPPGTGKT
Sbjct: 268 VGLSRKSFVLIQGPPGTGKT 287
>At4g15230.1 68417.m02333 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, PDR5-like ABC transporter
[Spirodela polyrhiza] GI:1514643; contains Pfam profile
PF00005: ABC transporter
Length = 1326
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +3
Query: 618 GIAQP-KGVLLYGPPGTGKTLLARAVA 695
GI +P + LL GPPG GKT L +A++
Sbjct: 162 GIVRPGRMTLLLGPPGCGKTTLLQALS 188
>At4g15215.1 68417.m02332 ABC transporter family protein similar to
PDR5-like ABC transporter [Spirodela polyrhiza]
GI:1514643; contains Pfam profile PF00005: ABC
transporter
Length = 1390
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +3
Query: 618 GIAQP-KGVLLYGPPGTGKTLLARAVA 695
GI +P + LL GPPG GKT L +A++
Sbjct: 159 GIVRPGRMTLLLGPPGCGKTTLLQALS 185
>At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyrin
repeat family protein contains Pfam profiles: PF00023
ankyrin repeat, PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 481
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +3
Query: 501 VEKVPDSTYEMVG--GLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKT 674
+E + D +VG L Q+++ + + L + L +G +P + G PGTGKT
Sbjct: 200 MELLEDELSNIVGLSELKTQLRKWAKGMLLDERRRALGLNIGTRRPPHMAFLGNPGTGKT 259
Query: 675 LLARAV 692
++AR +
Sbjct: 260 MVARVL 265
>At3g16340.1 68416.m02066 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]; contains Pfam profile: PF00005 ABC
transporter
Length = 1416
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 603 LFDALGIAQPKGV-LLYGPPGTGKTLLARAVA 695
L D GI +P + LL GPP +GKT L A+A
Sbjct: 163 LRDVSGIIKPSRMTLLLGPPSSGKTTLLLALA 194
>At1g63750.1 68414.m07214 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1131
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = +3
Query: 513 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 692
P +E + GL+ +K+I+ ++ L K L +GI+ GP G GK+ +ARA+
Sbjct: 184 PSKDFEDMMGLEAHLKKIQSLLRLDYKDEALI--IGIS--------GPAGIGKSTIARAL 233
>At1g63160.1 68414.m07138 replication factor C 40 kDa, putative
similar to SWISS-PROT:Q9WUK4 activator 1 40 kDa subunit
(Replication factor C 40 kDa subunit, A1 40 kDa subunit,
RF-C 40 kDa subunit, RFC40) [Mus musculus]
Length = 333
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 639 VLLYGPPGTGKTLLARAVAH 698
++L GPPGTGKT A+AH
Sbjct: 51 LILSGPPGTGKTTSILALAH 70
>At1g08270.1 68414.m00913 expressed protein low similarity to
SP|P46467 SKD1 protein (Vacuolar sorting protein 4b)
{Mus musculus}
Length = 126
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +3
Query: 498 MVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELF 608
++ + P+ + +V GL+ + +KE + LPV P+ F
Sbjct: 83 IIREKPNVKWTVVAGLESAKQALKEAVILPVNFPQFF 119
>At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1127
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 645 LYGPPGTGKTLLARAVAHHTECTF 716
++GP G GKT +ARA+ C F
Sbjct: 213 IWGPSGIGKTTIARALFSRLSCQF 236
>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1189
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/82 (23%), Positives = 40/82 (48%)
Frame = +3
Query: 471 KVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 650
K+ +S +++ P ++ + G+ ++++K ++ L + +GI +
Sbjct: 215 KIATDISNILINSTPSRDFDGLVGMRAHLEKMKPLLCLDTDEVRI---IGI--------W 263
Query: 651 GPPGTGKTLLARAVAHHTECTF 716
GPPG GKT +AR V + +F
Sbjct: 264 GPPGIGKTTIARVVYNQLSHSF 285
>At4g30490.1 68417.m04329 AFG1-like ATPase family protein contains
Pfam profile: PF03969 AFG1-like ATPase
Length = 497
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 633 KGVLLYGPPGTGKTLLARAVAHHTECTF 716
KG+ LYG GTGKT+L CT+
Sbjct: 162 KGLYLYGGVGTGKTMLMDLFFDQLPCTW 189
>At3g53480.1 68416.m05904 ABC transporter family protein PDR5-like
ABC transporter, Spirodela polyrrhiza, EMBL:Z70524
Length = 1450
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 609 DALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTE 707
D GI +P + LL GPP GKT L +A++ + E
Sbjct: 192 DVNGIIKPGRLTLLLGPPSCGKTTLLKALSGNLE 225
>At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 896
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/86 (23%), Positives = 44/86 (51%)
Frame = +3
Query: 435 NESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDA 614
NES + KI+ + +S M+ P ++ + G+ ++++K ++++
Sbjct: 209 NESGMIEKIVSD-----ISEMLNHSTPSRDFDDLIGMGDHMEKMKPLLDIDSD------- 256
Query: 615 LGIAQPKGVLLYGPPGTGKTLLARAV 692
+ K + ++GPPG GKT +AR++
Sbjct: 257 ----EMKTIGIWGPPGVGKTTIARSL 278
>At1g73170.1 68414.m08466 expressed protein
Length = 666
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3
Query: 639 VLLYGPPGTGKTLLARAVA 695
+LL GPPG GKT + R VA
Sbjct: 200 LLLIGPPGVGKTTMIREVA 218
>At1g24290.1 68414.m03065 AAA-type ATPase family protein similar to
Werner helicase interacting protein [Homo sapiens]
GI:14349166; contains Pfam profiles PF00004: ATPase
family associated with various cellular activities
(AAA), PF00627: UBA/TS-N domain; contains
ATP/GTP-binding site motif A (P-loop)
Length = 525
Score = 29.1 bits (62), Expect = 3.1
Identities = 9/23 (39%), Positives = 19/23 (82%)
Frame = +3
Query: 639 VLLYGPPGTGKTLLARAVAHHTE 707
++ +GPPGTGKT +A+++ + ++
Sbjct: 140 IVFWGPPGTGKTSIAKSLINSSK 162
>At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1038
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +3
Query: 510 VPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 689
+P +E + GLD ++++ ++ L + K + ++GP G GKT +ARA
Sbjct: 176 IPSRDFEEMVGLDAHLRKLDSLL-----------CLNSDEVKMIGIWGPAGIGKTTIARA 224
Query: 690 VAHHTECTF 716
+ + F
Sbjct: 225 LYNQLSTNF 233
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 633 KGVLLYGPPGTGKTLLARAVAHH 701
+ + ++G PG GKT LA+AV +H
Sbjct: 190 RSIGIWGMPGIGKTTLAKAVFNH 212
>At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identical
to heat shock protein 101 GI:6715468 GB:AAF26423 from
[Arabidopsis thaliana]
Length = 911
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +3
Query: 627 QPKGVLLY-GPPGTGKTLLARAVA 695
QP G L+ GP G GKT LA+A+A
Sbjct: 597 QPTGSFLFLGPTGVGKTELAKALA 620
>At1g59870.1 68414.m06745 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1469
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 603 LFDALGIAQP-KGVLLYGPPGTGKTLLARAVA 695
L D G+ +P + LL GPP +GKT L A+A
Sbjct: 187 LKDISGVIKPGRMTLLLGPPSSGKTTLLLALA 218
>At1g04730.1 68414.m00469 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 954
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +3
Query: 618 GIAQPKGVLLYGPPGTGKTLLARAVAHH 701
G + K +LL G PG GKT LA A H
Sbjct: 341 GPPEQKILLLCGAPGLGKTTLAHIAAKH 368
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +3
Query: 612 ALGIAQPKGVLLY-GPPGTGKTLLARAV 692
ALG+ + + V++ GPPGTGKT + + V
Sbjct: 496 ALGVNKKRPVMIVQGPPGTGKTGMLKEV 523
>At4g26090.1 68417.m03756 disease resistance protein RPS2
(CC-NBS-LRR class), putative domain signature CC-NBS-LRR
exists, suggestive of a disease resistance protein.
identical to RPS2 (gi:13661831)
Length = 909
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 564 IKEVIELPVKHPELFDALGIAQPKGVL-LYGPPGTGKTLLARAV 692
IK V+ ++ + L + +G++ +YGP G GKT L +++
Sbjct: 152 IKSVVGNTTMMEQVLEFLSEEEERGIIGVYGPGGVGKTTLMQSI 195
>At1g14460.1 68414.m01715 DNA polymerase-related weak similarity to
DNA polymerase III holoenzyme tau subunit [Thermus
thermophilus] GI:2583049
Length = 1116
Score = 28.3 bits (60), Expect = 5.5
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +3
Query: 504 EKVPDSTYEMVGGLDKQIKEI--KEVIELPVKHPELFDALGIAQPKGVLLY-GPPGTGKT 674
E+ ST E + L ++ K + E+I + L +A+ + V L+ GP GTGKT
Sbjct: 411 EEEGGSTPESIQSLSQKYKPMFFDELIGQSIVVQSLMNAVKKGRVAHVYLFQGPRGTGKT 470
Query: 675 LLARAVAHHTECTFI 719
AR ++ C +
Sbjct: 471 STARILSAALNCDVV 485
>At1g06720.1 68414.m00714 expressed protein contains Pfam domain,
PF04950: Protein of unknown function (DUF663)
Length = 1147
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 597 PELFDALGIAQPKGVLLYGPPGTGKTLLARAV 692
P++ G A P V++ GPPG GK+L+ +++
Sbjct: 72 PKIDRNYGEAPPFVVVVQGPPGVGKSLVIKSL 103
>At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1046
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 645 LYGPPGTGKTLLARAVAHHTECTF 716
+YGP G GKT +ARA+ +F
Sbjct: 215 IYGPAGIGKTTIARALHSRLSSSF 238
>At4g38870.1 68417.m05504 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 426
Score = 27.9 bits (59), Expect = 7.2
Identities = 24/98 (24%), Positives = 46/98 (46%)
Frame = +1
Query: 178 SSLSPKNLKIFVVFKPSVMNSTLKFVCYARSFSSCKNRDRTSEKWLNQWIKRRSS*KFIL 357
S L P +L I + K + ++F+C ++ ++S + +LN+ +KR S F+
Sbjct: 50 SELLPVDL-IMEILKKLSLKPLIRFLCVSKLWASIIRDPYFMKLFLNESLKRPKSLVFVF 108
Query: 358 KVNSSSI*TRTLILTMSRPIVVSLFATKAIPYTKYYPT 471
+ S ++ L +R I S ++ A T Y+ T
Sbjct: 109 RAQSLGSIFSSVHLKSTREISSSSSSSSASSIT-YHVT 145
>At4g28070.1 68417.m04026 AFG1-like ATPase family protein contains
Pfam profile: PF03969 AFG1-like ATPase
Length = 464
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 621 IAQPKGVLLYGPPGTGKTLLARAVAH 698
++ KG+ LYG GTGKT+L H
Sbjct: 130 VSPVKGLYLYGGVGTGKTMLMDLFFH 155
>At1g79050.1 68414.m09217 DNA repair protein recA identical to DNA
repair protein recA, chloroplast [Precursor] SP:Q39199
from [Arabidopsis thaliana] ;contains Pfam profile:
PF00154 recA bacterial DNA recombination protein
Length = 439
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +3
Query: 612 ALGIAQPKG--VLLYGPPGTGKTLLA 683
ALG PKG V +YGP +GKT LA
Sbjct: 127 ALGGGLPKGRVVEIYGPESSGKTTLA 152
>At5g60340.1 68418.m07564 maoC-like dehydratase domain-containing
protein contains similarity to (R)-specific enoyl-CoA
hydratase PhaJ1 [Pseudomonas oleovorans]
gi|22506675|gb|AAM97601; contains Pfam domain PF01575:
MaoC like domain
Length = 337
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 639 VLLYGPPGTGKTLLARAVAHHTECTFI 719
+L+ G PGTGK+ A A+A T +I
Sbjct: 16 LLITGTPGTGKSTTASALAEATNLRYI 42
>At5g47040.1 68418.m05797 Lon protease homolog 1, mitochondrial
(LON) identical to Lon protease homolog 1 mitochondrial
precursor SP:O64948 from [Arabidopsis thaliana]
Length = 888
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 651 GPPGTGKTLLARAVAHHTECTFIR 722
GPPG GKT LA ++A F+R
Sbjct: 408 GPPGVGKTSLASSIAAALGRKFVR 431
>At4g15233.1 68417.m02334 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, PDR5-like ABC transporter
[Spirodela polyrhiza] GI:1514643; contains Pfam profile
PF00005: ABC transporter
Length = 1168
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +3
Query: 618 GIAQPKGV-LLYGPPGTGKTLLARAVA 695
GI +PK + LL GPP GKT L A++
Sbjct: 159 GIIRPKRMTLLLGPPSCGKTTLLLALS 185
>At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1234
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 576 IELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 692
IE +K L L + + V ++GP G GKT +ARA+
Sbjct: 184 IEDHIKELSLLLCLESEEVRMVGIWGPTGIGKTTIARAL 222
>At3g29185.2 68416.m03659 expressed protein
Length = 411
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 291 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDL 380
G V ++ D+KKV VH EGK DL
Sbjct: 333 GQVVQDISSTSDEKKVTTNVHWEGKMSKDL 362
>At3g29185.1 68416.m03658 expressed protein
Length = 433
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 291 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDL 380
G V ++ D+KKV VH EGK DL
Sbjct: 333 GQVVQDISSTSDEKKVTTNVHWEGKMSKDL 362
>At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1215
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 600 ELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTF 716
EL L + + + ++GPPG GKT + R + + +F
Sbjct: 241 ELLLCLDSCEVRMIGIWGPPGIGKTTIVRFLYNQLSSSF 279
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,239,894
Number of Sequences: 28952
Number of extensions: 278327
Number of successful extensions: 1220
Number of sequences better than 10.0: 149
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -