Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0556
         (439 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    23   1.3  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   3.9  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   3.9  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           21   5.1  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   6.8  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   6.8  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   6.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   6.8  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   6.8  
AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    21   6.8  
EF222289-1|ABN79649.1|   68|Tribolium castaneum adipokinetic hor...    20   9.0  

>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 97  PPNHASREKRIFFQIKTMFV 38
           PP+HA  EK+  F   T+F+
Sbjct: 126 PPHHAPEEKKRSFWAVTIFL 145


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 362 DPSKPGRVGDWCSLTADCNFPDA 430
           D S P  +G WC      + PDA
Sbjct: 109 DASDPDAMGKWCPRREWSSPPDA 131


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 362 DPSKPGRVGDWCSLTADCNFPDA 430
           D S P  +G WC      + PDA
Sbjct: 265 DASDPDAMGKWCPRREWSSPPDA 287


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 125 QHVSNSRAAASESRVTGEAHFLSN*DNVR 39
           QH+ N  AAA ES   G    LS  + +R
Sbjct: 77  QHIPNFIAAAFESNSRGGNKKLSKVETLR 105


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 251 MPRSLTPCHMPNIYP 207
           M  +LTPC  PN  P
Sbjct: 126 METTLTPCASPNRKP 140


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 201 NDWVYVWHVTGSKGARHAGRALQ 269
           ND+ ++W V  S    +A RA +
Sbjct: 492 NDFGFIWLVLSSTVRAYASRAFK 514


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 260 SPRMPRSLTPCHMPNIYPV 204
           SP M +     H P++YP+
Sbjct: 178 SPEMSQVAASWHTPSMYPL 196


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 260 SPRMPRSLTPCHMPNIYPV 204
           SP M +     H P++YP+
Sbjct: 70  SPEMSQVAASWHTPSMYPL 88


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 112 TPAPRPPNH 86
           TP+P PP+H
Sbjct: 118 TPSPGPPSH 126


>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 6/24 (25%), Positives = 13/24 (54%)
 Frame = +2

Query: 107 GSLTHVAEGNKVQFCKAQPWLVRC 178
           G++ H     ++QF   +  L++C
Sbjct: 27  GNIIHTTSNKQLQFFAVEHLLIQC 50


>EF222289-1|ABN79649.1|   68|Tribolium castaneum adipokinetic
           hormone 2 protein.
          Length = 68

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 163 GLCLAELNLIP 131
           GLC A+LN  P
Sbjct: 15  GLCAAQLNFTP 25


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,544
Number of Sequences: 336
Number of extensions: 1904
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9775509
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)