Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0556
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.02 |img1||mitochondrial ribosomal protein subunit L19|Sc...    26   2.9  
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.7  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    25   6.7  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      24   8.9  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    24   8.9  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    24   8.9  
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    24   8.9  

>SPAC343.02 |img1||mitochondrial ribosomal protein subunit
           L19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 182

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 16  PVPSKFRERTLS*FERKCASPVTRDSE 96
           PVP    +  LS FE+KC S +   SE
Sbjct: 34  PVPGPKHKDVLSLFEKKCRSVLDEQSE 60


>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 602

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 438 SQTASGKLQSAVSEHQSPTRPGFDGSV 358
           SQ  S KLQ  + EH     P  D +V
Sbjct: 393 SQILSSKLQILIDEHNETNSPKIDDTV 419


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -2

Query: 438 SQTASGKLQSAVSEHQSPTRPGFDGSVTPPLSSAEPSGARPSA-RTTASEASE 283
           S      L SA S+      PG    VTP   S  P+G + S  ++T S+ +E
Sbjct: 217 SSVVDSYLFSAPSDTSHAVSPGMLTFVTPSPHSHSPAGHQQSTPKSTLSKTNE 269


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -1

Query: 130 LCNMCQTPAPRPPNHASREKRIFFQIKTMFVR 35
           LCN+   P PR P +A    RI   I    VR
Sbjct: 488 LCNIFALPVPRTPFYAGFGNRITDAISYNHVR 519


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 390 SPTRPGFDGSVTPPLS 343
           SPTRPGF+  V  P S
Sbjct: 357 SPTRPGFNDYVNRPTS 372


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 378 PGFDGSVTPPLSSAEPSGARPSARTTASEASEG 280
           PG + +VTP  S    + ++P+A  T S  + G
Sbjct: 237 PGSNTTVTPSSSITGTNDSKPAASNTGSAPTTG 269


>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 397 APVADAARFRWIRNPSIEFGRA*RCQAERQD 305
           AP+ + A F  IRN  +E G    C +E QD
Sbjct: 465 APIIETASFDDIRNDLLEMG----CLSENQD 491


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,715,392
Number of Sequences: 5004
Number of extensions: 30321
Number of successful extensions: 96
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)