Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0556
(439 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0325 - 15787791-15788168 32 0.18
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 32 0.18
12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,768... 32 0.23
02_05_0897 + 32603060-32603387,32604348-32604589,32604681-326048... 30 0.71
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19... 29 1.2
02_05_0589 - 30176354-30176829,30176895-30177075 29 1.2
01_01_1130 + 8959909-8960396,8960588-8960638,8960736-8960827,896... 29 2.2
06_02_0363 - 15172528-15173224,15174564-15174856 28 2.9
06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445... 27 5.0
06_03_0716 - 23831590-23832159 27 5.0
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 27 6.6
10_08_0198 + 15688142-15690427,15690524-15690607,15691232-156913... 27 8.7
10_08_0084 - 14719688-14719978,14719994-14720101 27 8.7
05_05_0377 - 24498664-24500215,24500306-24500643 27 8.7
02_04_0290 - 21627733-21628353,21628424-21628663,21628874-216292... 27 8.7
01_06_0646 - 30832201-30832838,30833643-30833838,30833975-308341... 27 8.7
>08_02_0325 - 15787791-15788168
Length = 125
Score = 32.3 bits (70), Expect = 0.18
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = -2
Query: 432 TASGKLQSAVSEHQSPTRPGFDGSVTPPLSSAEPSGARPSARTTASEASE 283
TA G+ Q + ++P G+DG V PP A+ +GA SA A +++E
Sbjct: 75 TAGGEGQCWIRPSRAPVGRGWDGEVQPPTRPAKSNGA-SSANHIAHKSTE 123
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 32.3 bits (70), Expect = 0.18
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = -2
Query: 402 SEHQSPTRPGFDGSVTPPLSSAEPSGARPSARTTASEAS 286
S SPT PG G TP S PS + S+RTT S
Sbjct: 265 SSGSSPTTPGGGGGYTPTPSDTPPSPSSGSSRTTPGGCS 303
Score = 29.9 bits (64), Expect = 0.93
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2
Query: 402 SEHQSPTRPGFDGSVTPPLSSAEPSGARPSARTT 301
S SPT PG G TP S A PS + ++ TT
Sbjct: 187 SSDTSPTTPGGGGGYTPTPSDAPPSPSSDTSPTT 220
Score = 29.9 bits (64), Expect = 0.93
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2
Query: 402 SEHQSPTRPGFDGSVTPPLSSAEPSGARPSARTT 301
S SPT PG G TP S A PS + ++ TT
Sbjct: 213 SSDTSPTTPGGGGGYTPTPSDAPPSPSSDTSPTT 246
Score = 29.1 bits (62), Expect = 1.6
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -2
Query: 402 SEHQSPTRPGFDGSVTPPLSSAEPSGARPSARTT 301
S SPT PG G TP S PS + S+ TT
Sbjct: 239 SSDTSPTTPGGGGGYTPTPSDTPPSPSSGSSPTT 272
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -2
Query: 390 SPTRPGFDGSVTPPLSSAEPSGARPSARTTASEASEG 280
SPT PG G TP S PS PS+ T+ S G
Sbjct: 113 SPTTPGGGGGYTPTPSDTPPS---PSSDTSPSTPGGG 146
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 402 SEHQSPTRPGFDGSVTPPLSSAEPSGARPSARTT 301
S SPT PG G +P S PS + ++ TT
Sbjct: 161 SSDTSPTTPGGGGGYSPTPSDTPPSPSSDTSPTT 194
>12_01_0830 -
7678038-7678444,7678996-7680943,7681231-7681983,
7682701-7682824,7683590-7683723
Length = 1121
Score = 31.9 bits (69), Expect = 0.23
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = -2
Query: 417 LQSAVSEHQSPTRPGFDGSVTPPLSSAEPSGARPSARTT 301
LQS+ +SPT PG + ++TPP S P+ R SA ++
Sbjct: 134 LQSSTPSRRSPTPPG-NKTLTPPRRSPSPASRRMSATSS 171
>02_05_0897 +
32603060-32603387,32604348-32604589,32604681-32604824,
32604889-32605050,32605129-32605212,32605528-32605601,
32605850-32606039,32606120-32606275,32606368-32606465,
32606976-32607102,32607193-32607292,32607402-32607572,
32607790-32607838,32607912-32608003,32608705-32608774,
32608999-32609023,32609059-32609293,32609425-32609525,
32609614-32609865
Length = 899
Score = 30.3 bits (65), Expect = 0.71
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -2
Query: 396 HQSPTRPGFDGSVTPPLSSAEPSGARPSARTTASEASE 283
H++PT PG +VTP +S + SG PS+ T + + +
Sbjct: 713 HEAPT-PGSGWAVTPGVSFGDASGKNPSSYATPTPSGQ 749
>06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-196342,
196685-196780,197248-197399,198683-198823,199068-199319,
199463-199603,199686-200003,200146-200232,201025-202006,
202091-202179,202968-203072,203155-204306,204844-205359,
205455-205650,206299-207182
Length = 1979
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -2
Query: 414 QSAVSEHQSPTRPGFDGSVTPPLSSAEPSGARPSARTTASEAS 286
Q+A Q PTRP GS+ P+ S+ S +RPS + ++ S
Sbjct: 1699 QTAGVSQQVPTRPSVAGSIALPVGSS--SASRPSLQRHCAQPS 1739
>02_05_0589 - 30176354-30176829,30176895-30177075
Length = 218
Score = 29.5 bits (63), Expect = 1.2
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2
Query: 429 ASGKLQSAVSEHQSPTRPGFDGSVTPPLSSAEPSGARPSARTTAS 295
A G ++A++ + P +VT + PS +RPSART+ S
Sbjct: 136 APGPTRAALTLRRPPIGAPRPAAVTAAFTPTSPSASRPSARTSPS 180
>01_01_1130 +
8959909-8960396,8960588-8960638,8960736-8960827,
8960964-8961054,8961877-8961937,8962172-8962216,
8962318-8962391,8962565-8962637,8963288-8963345,
8963398-8963468,8963801-8963837,8964040-8964128,
8964207-8964263,8964366-8964449,8964529-8964627,
8964765-8964869,8965145-8965216,8965308-8965497,
8965810-8966207
Length = 744
Score = 28.7 bits (61), Expect = 2.2
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = -2
Query: 387 PTRPGFDGSVTPPLSSAEPSGARPSARTTASEASE 283
P P +G++TPP SSA PSG R T+SEA E
Sbjct: 86 PPPPPTNGTLTPPPSSA-PSG----GRATSSEARE 115
>06_02_0363 - 15172528-15173224,15174564-15174856
Length = 329
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -2
Query: 132 PSATCVKLPRR--GLRITRHGRSAFSFKLRQCSFAELA 25
P A ++LPRR LR RHG F+ + + FA+LA
Sbjct: 266 PQARELRLPRRPGALRRPRHGLGGFASLIVRVPFADLA 303
>06_03_1006 +
26844161-26844198,26844304-26844372,26844526-26844591,
26844831-26844902,26844982-26845053,26846179-26846244,
26846409-26846881,26846966-26847324,26847429-26847697,
26847780-26847918,26848323-26848462,26848612-26848768,
26848925-26848978,26849457-26849539,26851085-26851136
Length = 702
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 390 SPTRPGFDGSVTPPLSSAEPS 328
SPT P + S PP SSA PS
Sbjct: 173 SPTNPNLEPSPPPPSSSAPPS 193
>06_03_0716 - 23831590-23832159
Length = 189
Score = 27.5 bits (58), Expect = 5.0
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = +3
Query: 132 GIRFNSARHNPG*SGAKSRFPRRNDWVYVWHVTGSKGARHAGRALQVGGG 281
G ++ R G GA + F RR + V VW + +G R AGR L GGG
Sbjct: 129 GAAADTERSTDG-GGAGAEFRRRAE-VQVWWESDREGGR-AGRPLIEGGG 175
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 390 SPTRPGFDGSVTPPLSSAEPSGARPSARTTASEAS 286
+P P +G PP + A P P+A SEA+
Sbjct: 80 APPPPPAEGEAAPPPADAPPPEEAPAAEPAPSEAA 114
>10_08_0198 +
15688142-15690427,15690524-15690607,15691232-15691336,
15691420-15691528,15693037-15693188,15693278-15693583
Length = 1013
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 408 AVSEHQSPTRPGFDGSVTPPLSSAEPSGARPS 313
A++ + S P GS+ P P G+RPS
Sbjct: 462 AIASNNSGAGPSGSGSIISPTPQQGPKGSRPS 493
>10_08_0084 - 14719688-14719978,14719994-14720101
Length = 132
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +3
Query: 207 WVY-VWHVTGSKGARHAGRAL-QVGGG 281
WV VW V +GA H G L +VGGG
Sbjct: 27 WVVDVWVVVVVRGAEHGGELLGEVGGG 53
>05_05_0377 - 24498664-24500215,24500306-24500643
Length = 629
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 341 ELNGGVTDPSKPGRVG 388
EL+GGVTDP+ G VG
Sbjct: 262 ELDGGVTDPAVRGAVG 277
>02_04_0290 -
21627733-21628353,21628424-21628663,21628874-21629214,
21630934-21631612,21631893-21631962,21632063-21632190
Length = 692
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 192 PRRNDWVYVWHVTGSKGARHAGRALQVGGG 281
PR W Y GS GAR A++ GGG
Sbjct: 206 PRGVRWAYTGAGAGSGGARGGPAAIRGGGG 235
>01_06_0646 -
30832201-30832838,30833643-30833838,30833975-30834126,
30834258-30834303,30834992-30835216,30835374-30835414,
30835705-30835834,30835951-30836019,30836254-30836307,
30836389-30836547,30836854-30836991,30837079-30837141,
30837225-30837264,30837369-30837415,30838062-30838373
Length = 769
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 399 EHQSPTRPGFDGSVTPPLSSAEPSGA 322
+H SP PG+ PP++ A P A
Sbjct: 22 DHDSPAAPGYQHQQGPPVAKALPFSA 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,151,949
Number of Sequences: 37544
Number of extensions: 275647
Number of successful extensions: 985
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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