Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0556
         (439 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.96 
SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_54145| Best HMM Match : zf-CCHC (HMM E-Value=0.021)                 28   3.9  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.8  

>SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 902

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -1

Query: 280 PPPTWSARPACRAPLLPVTCQTYTQSFRRGKRLFAPD*PGLCLAELNL 137
           PPPTWS+    RAP  P +  T        KR+   D P L  + L +
Sbjct: 380 PPPTWSSWTNTRAPWSPWSAPTRPPGGSSRKRVDFDDYPALLPSVLTI 427


>SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1220

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 280 PPPTWSARPACRAPLLPVTCQTYTQ 206
           PPP  S  P C  P LP T + Y Q
Sbjct: 145 PPPPPSPPPPCHPPALPSTYRWYNQ 169


>SB_54145| Best HMM Match : zf-CCHC (HMM E-Value=0.021)
          Length = 286

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = -1

Query: 412 VGRQ*APVADAARFRW-IRNPS---IEFGRA*RCQAERQDHRE 296
           +G    PVA+  RFRW I +P    I+ G    CQ  + D+ E
Sbjct: 217 IGMPGQPVAELTRFRWTIISPGKEPIDIGNMLACQTTQVDYEE 259


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -2

Query: 393 QSPTRPGFDGSVTPPLSSAEPSGARPSARTTA 298
           QS    G DGS         PS  +PSART+A
Sbjct: 126 QSAKHTGKDGSPDKTFRDRTPSPPKPSARTSA 157


>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1646

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = -2

Query: 378  PGFDGSVTPPLSSA-----EPSGARPSARTTASEASEGR 277
            PGF  S  PP SS+      P  A+ S + T++E S+ +
Sbjct: 1040 PGFQQSTLPPQSSSAQPGTPPQNAKNSTKATSTEPSQSK 1078


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,176,077
Number of Sequences: 59808
Number of extensions: 283927
Number of successful extensions: 2270
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2269
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)