Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0556
         (439 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    25   1.2  
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    25   1.2  
AF063021-3|AAC16247.1|  484|Anopheles gambiae dopa decarboxylase...    23   6.3  
AF063021-2|AAC16249.1|  515|Anopheles gambiae dopa decarboxylase...    23   6.3  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    22   8.3  
AJ297930-1|CAC35450.1|  104|Anopheles gambiae hypothetical prote...    22   8.3  

>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -2

Query: 432 TASGKLQSAVSEHQSPTRPGFDGSVTPPLSSAEPSGARPSARTTASEAS 286
           TAS    S+ S   SP +     S   P SS   S  RP   +T++ +S
Sbjct: 9   TASSSTTSSSSSKPSPQQQQQLHSADVPHSSTSQSSRRPQHSSTSASSS 57


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -2

Query: 432 TASGKLQSAVSEHQSPTRPGFDGSVTPPLSSAEPSGARPSARTTASEAS 286
           TAS    S+ S   SP +     S   P SS   S  RP   +T++ +S
Sbjct: 9   TASSSTTSSSSSKPSPQQQQQLHSADVPHSSTSQSSRRPQHSSTSASSS 57


>AF063021-3|AAC16247.1|  484|Anopheles gambiae dopa decarboxylase
           isoform 2 protein.
          Length = 484

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 106 REFDTCCRGE*GSILQGT 159
           +EF  C  G+ G ++QGT
Sbjct: 140 KEFLACSGGQGGGVIQGT 157


>AF063021-2|AAC16249.1|  515|Anopheles gambiae dopa decarboxylase
           isoform 1 protein.
          Length = 515

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 106 REFDTCCRGE*GSILQGT 159
           +EF  C  G+ G ++QGT
Sbjct: 171 KEFLACSGGQGGGVIQGT 188


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 228  TGSKGARHAGRALQVGGG 281
            +G  G++H G ++  GGG
Sbjct: 2047 SGDNGSQHGGGSISGGGG 2064


>AJ297930-1|CAC35450.1|  104|Anopheles gambiae hypothetical protein
           protein.
          Length = 104

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 9/19 (47%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
 Frame = -1

Query: 139 LIPLCN-MCQTPAPRPPNH 86
           L  LC+  C  P P PP H
Sbjct: 16  LATLCHGACDEPCPVPPKH 34


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 461,635
Number of Sequences: 2352
Number of extensions: 8547
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 36568146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)