Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0556
(439 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z36948-2|CAA85410.1| 268|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical pr... 28 2.6
U58758-6|AAO38577.1| 604|Caenorhabditis elegans Hypothetical pr... 28 2.6
U58758-5|AAL11107.1| 693|Caenorhabditis elegans Hypothetical pr... 28 2.6
U58758-4|AAK68614.1| 914|Caenorhabditis elegans Hypothetical pr... 28 2.6
U58758-3|AAK68615.1| 905|Caenorhabditis elegans Hypothetical pr... 28 2.6
Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p... 28 3.4
AC024817-27|AAY86296.1| 636|Caenorhabditis elegans Hypothetical... 28 3.4
Z81119-3|CAB03334.1| 550|Caenorhabditis elegans Hypothetical pr... 27 6.0
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr... 27 7.9
>Z36948-2|CAA85410.1| 268|Caenorhabditis elegans Hypothetical
protein D2089.3 protein.
Length = 268
Score = 29.5 bits (63), Expect = 1.1
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -1
Query: 163 GLCLAELNLIPLCNMCQTPAPRPPNHASREKRIFFQIKTMFVRGT-CWARARSC 5
GL ++ELN+ TP P P H SR R+ Q F GT CW SC
Sbjct: 23 GLSISELNIDADLLKKLTPVPTVPAHISRTHRVGAQRYRQF--GTRCW-HGESC 73
>Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical
protein F07H5.8 protein.
Length = 872
Score = 28.3 bits (60), Expect = 2.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 280 PPPTWSARPACRAPLLPVTCQTYT 209
PPPT S +P C+ P +TYT
Sbjct: 675 PPPTPSCQPQCQPACQPSCMETYT 698
>U58758-6|AAO38577.1| 604|Caenorhabditis elegans Hypothetical
protein ZK1127.9e protein.
Length = 604
Score = 28.3 bits (60), Expect = 2.6
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -2
Query: 429 ASGKLQSAVSEHQSPTRPGFDGSVTPPLSSAEPSGARPSARTTASEASE 283
A K Q+A++ + + +G PLS A+ SGA +A A A +
Sbjct: 64 AQAKAQAALAAFMAQQKTSSNGGGGMPLSKAQASGAAAAAAVNAEAAKK 112
>U58758-5|AAL11107.1| 693|Caenorhabditis elegans Hypothetical
protein ZK1127.9c protein.
Length = 693
Score = 28.3 bits (60), Expect = 2.6
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -2
Query: 429 ASGKLQSAVSEHQSPTRPGFDGSVTPPLSSAEPSGARPSARTTASEASE 283
A K Q+A++ + + +G PLS A+ SGA +A A A +
Sbjct: 64 AQAKAQAALAAFMAQQKTSSNGGGGMPLSKAQASGAAAAAAVNAEAAKK 112
>U58758-4|AAK68614.1| 914|Caenorhabditis elegans Hypothetical
protein ZK1127.9a protein.
Length = 914
Score = 28.3 bits (60), Expect = 2.6
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -2
Query: 429 ASGKLQSAVSEHQSPTRPGFDGSVTPPLSSAEPSGARPSARTTASEASE 283
A K Q+A++ + + +G PLS A+ SGA +A A A +
Sbjct: 285 AQAKAQAALAAFMAQQKTSSNGGGGMPLSKAQASGAAAAAAVNAEAAKK 333
>U58758-3|AAK68615.1| 905|Caenorhabditis elegans Hypothetical
protein ZK1127.9b protein.
Length = 905
Score = 28.3 bits (60), Expect = 2.6
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -2
Query: 429 ASGKLQSAVSEHQSPTRPGFDGSVTPPLSSAEPSGARPSARTTASEASE 283
A K Q+A++ + + +G PLS A+ SGA +A A A +
Sbjct: 276 AQAKAQAALAAFMAQQKTSSNGGGGMPLSKAQASGAAAAAAVNAEAAKK 324
>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
protein F40G12.3 protein.
Length = 1099
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 411 SAVSEHQSPTRPGFDGSVTPPLSSAEPSGARPSARTTASEAS 286
S +S +PT PG T ++ S PSA T+++ +S
Sbjct: 852 SEISSELTPTSPGSASKTTSGMAKRASSSKHPSAVTSSARSS 893
>AC024817-27|AAY86296.1| 636|Caenorhabditis elegans Hypothetical
protein Y54G2A.40 protein.
Length = 636
Score = 27.9 bits (59), Expect = 3.4
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = -1
Query: 160 LCLAELNLIPLCNMCQTPAPRPPNHASREKRIFFQIKTMFVRGTCWARARSCD 2
LC N C +C P R N+A+R+ F+ M V W ++ D
Sbjct: 37 LCTQCFNKYKNCPICAKPLVRTENYAARQIYEQFKENPMIVFNKWWCSIQNTD 89
>Z81119-3|CAB03334.1| 550|Caenorhabditis elegans Hypothetical
protein T10H4.4 protein.
Length = 550
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -1
Query: 259 RPACRAPLLPVTCQTYTQ 206
+PA +APLLPVTC Y++
Sbjct: 4 KPA-KAPLLPVTCSVYSK 20
>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical
protein F30H5.3 protein.
Length = 1599
Score = 26.6 bits (56), Expect = 7.9
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 377 GRVGDWCSLTADC 415
GRVGD+CS DC
Sbjct: 110 GRVGDFCSFNTDC 122
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,979,322
Number of Sequences: 27780
Number of extensions: 189739
Number of successful extensions: 616
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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