Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0556
         (439 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   0.84 
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    21   4.5  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    21   4.5  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   5.9  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           21   5.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.9  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.8 bits (49), Expect = 0.84
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 429 ASGKLQSAVSEHQSPTRPGFDGSVTPPLSSAE 334
           AS KLQ+A  +HQ       DG  +PPL  ++
Sbjct: 139 ASCKLQAAAVDHQGSV---LDGPDSPPLVESQ 167


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 143 EPYSPLQHVSNSRAAASESRVT 78
           + + PL+H  N   A    RVT
Sbjct: 24  DEFEPLEHFENEERADRHRRVT 45


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 143 EPYSPLQHVSNSRAAASESRVT 78
           + + PL+H  N   A    RVT
Sbjct: 24  DEFEPLEHFENEERADRHRRVT 45


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +1

Query: 100 AAREFDTCCRG 132
           A  ++DTCC+G
Sbjct: 342 ATVQYDTCCQG 352


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -3

Query: 137 YSPLQHVSNSRAAASESRVT 78
           + PL+H  N   A    RVT
Sbjct: 1   FEPLEHFENEERADRHRRVT 20


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = +3

Query: 189 FPRRNDWVYV 218
           +PRR +W+Y+
Sbjct: 724 YPRRKEWLYL 733


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 115 QTPAPRPPNHAS 80
           Q+P P PPN AS
Sbjct: 650 QSPFPLPPNLAS 661


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 272 HLERSPRMPRSLTPCHMPNIYP 207
           H   S  + RS   CH P +YP
Sbjct: 287 HSHLSSALGRSA--CHSPGVYP 306


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,844
Number of Sequences: 438
Number of extensions: 2284
Number of successful extensions: 22
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)