Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0556
         (439 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62790.1 68418.m07882 1-deoxy-D-xylulose 5-phosphate reductoi...    28   2.4  
At3g02170.1 68416.m00190 expressed protein                             28   3.2  
At1g78650.1 68414.m09166 expressed protein weak similarity to DN...    28   3.2  
At5g57010.1 68418.m07115 calmodulin-binding family protein conta...    27   5.5  
At2g20760.1 68415.m02440 expressed protein                             27   5.5  
At2g39650.1 68415.m04862 expressed protein contains Pfam profile...    27   7.3  
At5g32775.1 68418.m03902 hypothetical protein                          26   9.7  
At3g58060.1 68416.m06472 cation efflux family protein / metal to...    26   9.7  
At3g21290.1 68416.m02690 dentin sialophosphoprotein-related cont...    26   9.7  
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ...    26   9.7  
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    26   9.7  

>At5g62790.1 68418.m07882 1-deoxy-D-xylulose 5-phosphate
           reductoisomerase (DXR) nearly identical to
           1-deoxy-d-xylulose-5-phosphate reductoisomerase
           [Arabidopsis thaliana] GI:4886307; contains Pfam profile
           PF02670: 1-deoxy-D-xylulose 5-phosphate reductoisomerase
          Length = 477

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -1

Query: 361 RNPSIEFGRA*RCQAERQDHRE*GQRRPPPTWSARPACRAP 239
           RN    FG+  +C  + Q      Q++PPP W  R    AP
Sbjct: 38  RNQGRGFGKGVKCSVKVQQ-----QQQPPPAWPGRAVPEAP 73


>At3g02170.1 68416.m00190 expressed protein
          Length = 905

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -2

Query: 438 SQTASGKLQS-AVSEHQSPTRPGFDGSVTPPLSSAEPSGARPSARTTASEASEGR 277
           S T SG+ Q  +VS    P + GF+    P    +EP G R   R     AS  R
Sbjct: 500 SMTKSGRSQQHSVSPRTQPKKLGFEKQTRPTTPKSEP-GKRQLGRQQTEVASPRR 553


>At1g78650.1 68414.m09166 expressed protein weak similarity to DNA
           polymerase delta subunit 3 (DNA polymerase delta subunit
           p66) (Swiss-Prot:Q15054) [Homo sapiens]
          Length = 509

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 402 SEHQSPTRPGFDGSVTPPLSSAEPSGARPSARTTAS 295
           SE   P +P  D  V+P + S EP  ++   + TAS
Sbjct: 344 SEDSGPEKP--DADVSPEIKSEEPEASKEDRQNTAS 377


>At5g57010.1 68418.m07115 calmodulin-binding family protein contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 495

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 280 PPPTWSARPACRAPLLPVTCQTYTQSFRRGKRL 182
           P P WS RP+       VT Q   +S+R  + L
Sbjct: 119 PTPFWSPRPSTELDAAAVTLQKVYKSYRTRRNL 151


>At2g20760.1 68415.m02440 expressed protein
          Length = 338

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 133 PLCNMCQTPAPRPPNHASREKRIFFQIKT 47
           P  N+ Q P P  P    R ++IF ++KT
Sbjct: 212 PSVNVIQGPKPGKPTDLGRMRQIFLKLKT 240


>At2g39650.1 68415.m04862 expressed protein contains Pfam profile
           PF04720: Protein of unknown function (DUF506)
          Length = 291

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 377 GRVGDWCSLTADCNFPD 427
           G  G WCS  +D  FPD
Sbjct: 43  GGAGSWCSSDSDSGFPD 59


>At5g32775.1 68418.m03902 hypothetical protein
          Length = 240

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -2

Query: 414 QSAVSEHQSPTRPG-FDGSVTPPLSSAEPSGARPSARTTASEASEGR 277
           Q+    H S  R   F   + PPL      G+R S+ TT S  S  R
Sbjct: 78  QTITRSHHSTMRSSVFTSIIRPPLDLVTQPGSRVSSDTTRSHHSTPR 124


>At3g58060.1 68416.m06472 cation efflux family protein / metal
           tolerance protein, putative (MTPc3) member of the cation
           diffusion facilitator (CDF) family, or cation efflux
           (CE) family, PMID:11500563
          Length = 411

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -3

Query: 227 HMPNIYPVISAWKAALCTGLARVVPCRIEPYSPLQHVSNSRAA 99
           H P +  ++S+ K+     L + +  +I+P +PL H+  S+AA
Sbjct: 22  HKPKLTGMVSSMKSNFFADLPQKLRSKIDPENPL-HLDVSKAA 63


>At3g21290.1 68416.m02690 dentin sialophosphoprotein-related
           contains weak similarity to Dentin sialophosphoprotein
           precursor (Swiss-Prot:Q9NZW4) [Homo sapiens]
          Length = 1192

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 110 SRAAASESRVTGEAHFLSN*DNVRSR-NLLG 21
           S  A  E  ++G+ HF S  DN+R R N +G
Sbjct: 636 SPTANGEVGISGQEHFTSGHDNLRERQNFIG 666


>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 407

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 408 AVSEHQSPTRPGFDGSVTPPLSSAEPSGARPSARTTASEASEG 280
           ++S   SP+R    GS +PP     P+G     R+     S+G
Sbjct: 43  SLSSSSSPSRSVSSGSRSPPRRGKSPAGPARRGRSPPPPPSKG 85


>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 414

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 408 AVSEHQSPTRPGFDGSVTPPLSSAEPSGARPSARTTASEASEG 280
           ++S   SP+R    GS +PP     P+G     R+     S+G
Sbjct: 43  SLSSSSSPSRSVSSGSRSPPRRGKSPAGPARRGRSPPPPPSKG 85


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,580,225
Number of Sequences: 28952
Number of extensions: 180052
Number of successful extensions: 565
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)