Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0554
         (783 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    23   2.8  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            23   2.8  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   2.8  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   3.6  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   8.4  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 84  EFPEQSIYLDSLRECYEAYVIYNFMKYLLNYLND 185
           +FP    Y  SL +CY   ++   + +++ +L D
Sbjct: 32  DFPTNQKYYPSLAKCYACLLMVVKILWVIYWLQD 65


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 562 PWKKEKKTT 536
           PW KEKKTT
Sbjct: 116 PWMKEKKTT 124


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 562 PWKKEKKTT 536
           PW KEKKTT
Sbjct: 116 PWMKEKKTT 124


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +3

Query: 537 VVFFSFFQGVIITILVYCGVLKTIFDISDT 626
           ++F  F   +II +++YC + K +   + T
Sbjct: 241 IIFLFFIIPLIILLILYCIIAKNLMSNAAT 270


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 105 YLDSLRECYEAYVIYN 152
           Y+   R CY  Y +YN
Sbjct: 252 YVPFYRYCYRPYPVYN 267


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,102
Number of Sequences: 336
Number of extensions: 4308
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)