Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0554
(783 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1475 - 30391555-30391890,30391982-30392233,30392358-303926... 139 2e-33
05_06_0083 + 25429958-25429967,25431035-25431144,25431286-254313... 139 2e-33
02_05_0259 - 27226378-27226398,27226643-27226813,27227063-272272... 131 5e-31
07_03_0529 - 19107949-19108152,19108857-19109147,19109817-191099... 118 4e-27
07_01_0961 + 8070992-8071015,8071016-8071089,8073051-8073200,807... 117 9e-27
03_04_0019 + 16500877-16501029,16501184-16501240,16501560-165016... 107 7e-24
04_04_0803 - 28165828-28166136,28166257-28166505,28166628-281668... 85 8e-17
03_06_0530 - 34545699-34546013,34546121-34546354,34547006-345470... 61 8e-10
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 31 1.4
12_02_1083 - 25922670-25922867,25922962-25923213,25923674-259238... 29 5.5
>06_03_1475 -
30391555-30391890,30391982-30392233,30392358-30392619,
30393232-30393320,30393408-30393592,30393673-30393781,
30393886-30393942,30394047-30394196
Length = 479
Score = 139 bits (337), Expect = 2e-33
Identities = 85/238 (35%), Positives = 132/238 (55%), Gaps = 17/238 (7%)
Frame = +3
Query: 21 KHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYEAYVIYNFMKYLLNYL------- 179
K ++ ++ MVP YA+ + I L P S+ ++ LR+ YEA+ +Y F +YL+ L
Sbjct: 53 KFLVGVILMVPCYAVESYISLVNPSISVDIEILRDGYEAFAMYCFGRYLVACLGGEDRTI 112
Query: 180 -------NDGHDLEAVLETKPQVY--HIFPL-CCLAPWEMGREFVHNCKHGILQYTLVRP 329
+ G D+ + Q Y H FP+ L PW +G F K G++QY +++
Sbjct: 113 EFLKREGSSGSDVPLLDHETGQRYVNHPFPMNYMLKPWPLGEWFYLVIKFGLVQYVIIKT 172
Query: 330 ITTVISMICELNDVYGESDFKPNVAFPYIIAINNLSQFVAMYCLVLFYKANRTELKPMKP 509
I ++++I E VY E +FK N + Y + N SQ A+YCLV FY A + EL +KP
Sbjct: 173 ICAILAVILESFGVYCEGEFKWNCGYSYTAVVLNFSQSWALYCLVQFYAAIKDELAHIKP 232
Query: 510 IGKFLCIKAVVFFSFFQGVIITILVYCGVLKTIFDISDTDTVKIISSKLQDFLICIEM 683
+ KFL K++VF +++QGV+I +L G+L+ I+ K S +QDF+ICIEM
Sbjct: 233 LAKFLTFKSIVFLTWWQGVVIALLYNWGLLRG--PIAQELQFK---SSIQDFIICIEM 285
>05_06_0083 +
25429958-25429967,25431035-25431144,25431286-25431342,
25431828-25431936,25432329-25432513,25432595-25432683,
25432877-25433132,25433623-25433865,25433955-25434266
Length = 456
Score = 139 bits (337), Expect = 2e-33
Identities = 74/238 (31%), Positives = 128/238 (53%), Gaps = 17/238 (7%)
Frame = +3
Query: 21 KHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYEAYVIYNFMKYLLNYLNDGHDLE 200
K +I ++ MVP+YA+ + L + + +R+CYEA+ +Y F +YL+ L
Sbjct: 43 KFLIGLILMVPVYAVQSFFSLLNSNVAFICELMRDCYEAFAMYCFERYLIACLGGEESTI 102
Query: 201 AVLETKPQ----------------VYHIFPL-CCLAPWEMGREFVHNCKHGILQYTLVRP 329
+E + Q V H FPL + W +G +F H K GI+QY +++P
Sbjct: 103 RFMEGRFQFSESSPLLDVDYDYGIVKHPFPLNWFMRNWYLGPDFYHAVKVGIVQYMILKP 162
Query: 330 ITTVISMICELNDVYGESDFKPNVAFPYIIAINNLSQFVAMYCLVLFYKANRTELKPMKP 509
I ++++ +L +YGE F +PY+ + N SQ A+YCL+ FY A + +L+P+KP
Sbjct: 163 ICAILAIFMQLIGIYGEGKFAWRYGYPYLAIVLNFSQTWALYCLIQFYTATKEKLEPIKP 222
Query: 510 IGKFLCIKAVVFFSFFQGVIITILVYCGVLKTIFDISDTDTVKIISSKLQDFLICIEM 683
+ KFL K++VF +++QG+ + L G+ K + +++QD++IC+EM
Sbjct: 223 LSKFLTFKSIVFLTWWQGIAVAFLFSTGLFK-------GHLAQRFQTRIQDYIICLEM 273
>02_05_0259 -
27226378-27226398,27226643-27226813,27227063-27227284,
27227508-27227668,27227933-27227996,27228002-27228194,
27228499-27228587,27228668-27228852,27229671-27229779,
27229880-27229936,27230023-27230175
Length = 474
Score = 131 bits (317), Expect = 5e-31
Identities = 71/213 (33%), Positives = 116/213 (54%), Gaps = 17/213 (7%)
Frame = +3
Query: 21 KHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYEAYVIYNFMKYLLNYL------- 179
K ++ ++ MVP YA+ + + L P+ S+Y LR+ YEA+ +Y F +Y+ L
Sbjct: 54 KFVLGVILMVPCYAVESYVSLVNPDTSVYCGILRDAYEAFAMYCFGRYITACLGGEERTI 113
Query: 180 ---------NDGHDLEAVLETKPQVYHIFPL-CCLAPWEMGREFVHNCKHGILQYTLVRP 329
+ G L K ++H FP+ L PW MG F K GI QY +++
Sbjct: 114 AFLKREGGGDSGEPLLHGASEKGIIHHHFPVNYILKPWRMGVRFYQIIKFGIFQYVIIKT 173
Query: 330 ITTVISMICELNDVYGESDFKPNVAFPYIIAINNLSQFVAMYCLVLFYKANRTELKPMKP 509
+T +S+I + Y + +F +PY A+ N SQ+ A+YCLV +Y A + EL +KP
Sbjct: 174 LTASLSLILQPFGAYCDGEFNLRCGYPYFAAVLNFSQYWALYCLVEWYTATKDELAHIKP 233
Query: 510 IGKFLCIKAVVFFSFFQGVIITILVYCGVLKTI 608
+ KFL K++VF +++QG++I I+ G LK++
Sbjct: 234 LAKFLSFKSIVFLTWWQGIMIAIMYSLG-LKSV 265
>07_03_0529 -
19107949-19108152,19108857-19109147,19109817-19109939,
19110019-19110306
Length = 301
Score = 118 bits (285), Expect = 4e-27
Identities = 80/230 (34%), Positives = 126/230 (54%), Gaps = 8/230 (3%)
Frame = +3
Query: 21 KHIIRILWMVPIYALNALIGLEFPEQS----IYLDSLRECYEAYVIYNFMKYLLNYLNDG 188
K I+ I+ M P+YA+N+ +GL + S +LD+++ECYEA I FM + +YLN
Sbjct: 53 KAILIIVLMAPLYAINSFVGLLDIKGSKTFFTFLDAVKECYEALAIAKFMALMYSYLNIS 112
Query: 189 HDLEAVL-ETKPQV-YHIFPLCCLAPWEMGREF--VHNCKHGILQYTLVRPITTVISMIC 356
V E K +V +H FP+ P + E + K+ Q+ +VRPI ++ +
Sbjct: 113 ISKNIVPDEIKGRVLHHSFPVSLFLPRNVRLEHKTLKLLKYWTWQFVVVRPICAILMITL 172
Query: 357 ELNDVYGESDFKPNVAFPYIIAINNLSQFVAMYCLVLFYKANRTELKPMKPIGKFLCIKA 536
+L +Y V++ + I +N S +A+Y LV+FY EL P KP+ KFLCIK
Sbjct: 173 QLLGLYPSW-----VSWTFTIILN-FSVSMALYALVIFYHLFAKELAPHKPLAKFLCIKG 226
Query: 537 VVFFSFFQGVIITILVYCGVLKTIFDISDTDTVKIISSKLQDFLICIEMV 686
+VFFSF+QG + +L G++++ D V+ I +Q+ L+ IEMV
Sbjct: 227 IVFFSFWQGFALEVLAAVGIIQSHHFWLD---VEHIQEAIQNVLVIIEMV 273
>07_01_0961 +
8070992-8071015,8071016-8071089,8073051-8073200,
8073307-8073592,8074077-8074220,8074357-8074665
Length = 328
Score = 117 bits (282), Expect = 9e-27
Identities = 60/179 (33%), Positives = 99/179 (55%), Gaps = 1/179 (0%)
Frame = +3
Query: 45 MVPIYALNALIGLEFPEQSIYLDSLRECYEAYVIYNFMKYLLNYLNDGHDLEAVLETKPQ 224
+V +YA+ + + L P +IY +S+RE Y+A+VIYNF L ++ + L +
Sbjct: 6 IVQVYAVMSFLSLVLPGSAIYFNSIREIYDAWVIYNFFSLCLAWVGGPGAVVVSLTGRSL 65
Query: 225 VYHIFPL-CCLAPWEMGREFVHNCKHGILQYTLVRPITTVISMICELNDVYGESDFKPNV 401
F + CC + + F+ CK G LQ+ +++PI VI+ I Y + +F N
Sbjct: 66 KPSWFMMTCCFSAVPLDGRFIRRCKQGCLQFVILKPILVVITFILYAKGKYEDGNFSVNQ 125
Query: 402 AFPYIIAINNLSQFVAMYCLVLFYKANRTELKPMKPIGKFLCIKAVVFFSFFQGVIITI 578
++ YI I +S +A++ L LFY A R L+P P+ KF+ IK+VVF +++Q +I I
Sbjct: 126 SYLYITIIYTISYSMALFALALFYVACRDLLQPYNPVPKFIIIKSVVFLTYWQMLIAAI 184
>03_04_0019 +
16500877-16501029,16501184-16501240,16501560-16501668,
16501837-16502021,16502103-16502182,16502869-16503085,
16503394-16503633,16503720-16504028
Length = 449
Score = 107 bits (258), Expect = 7e-24
Identities = 76/238 (31%), Positives = 119/238 (50%), Gaps = 17/238 (7%)
Frame = +3
Query: 21 KHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYEAYVIYNFMKYLLNYLNDGHDLE 200
K II +L+MVP+YA ++I L E S+ D LR CYEA+ +Y F +YL+ L +
Sbjct: 54 KWIIAVLFMVPVYASESIISLWHSEFSLACDILRNCYEAFALYAFGRYLVACLGGERQVF 113
Query: 201 AVLETKPQ---VYHIFPLCCLAP-----------WE---MGREFVHNCKHGILQYTLVRP 329
+LE K + + AP W+ +G K G++QY +++
Sbjct: 114 RLLENKKREELTEQLLESQDKAPVRNRSRVHIFFWDPNALGERLYTIIKFGLVQYMILKS 173
Query: 330 ITTVISMICELNDVYGESDFKPNVAFPYIIAINNLSQFVAMYCLVLFYKANRTELKPMKP 509
+ +S I EL YG+ +FK Q A+YCLV FY A +L+ ++P
Sbjct: 174 LCAFLSSILELFGKYGDGEFK--------------CQTWALYCLVKFYNATHEKLQEIRP 219
Query: 510 IGKFLCIKAVVFFSFFQGVIITILVYCGVLKTIFDISDTDTVKIISSKLQDFLICIEM 683
+ KF+ KA+VF +++QG+ I I+ + G+L + + +QDFLICIEM
Sbjct: 220 LAKFISFKAIVFATWWQGLGIAIICHIGILPKEGKVQNA---------IQDFLICIEM 268
>04_04_0803 -
28165828-28166136,28166257-28166505,28166628-28166889,
28168116-28168204,28168286-28168342,28168443-28168595
Length = 372
Score = 84.6 bits (200), Expect = 8e-17
Identities = 48/123 (39%), Positives = 75/123 (60%)
Frame = +3
Query: 315 TLVRPITTVISMICELNDVYGESDFKPNVAFPYIIAINNLSQFVAMYCLVLFYKANRTEL 494
+L+ P T+V I L D Y +PY A+ N SQ+ A+YCLV +Y A + EL
Sbjct: 73 SLINPNTSVYCGI--LRDGYEAFAMYCFGRYPYFAAVLNFSQYWALYCLVEWYTATKDEL 130
Query: 495 KPMKPIGKFLCIKAVVFFSFFQGVIITILVYCGVLKTIFDISDTDTVKIISSKLQDFLIC 674
+KP+ KFL K++VF +++QGV+I I+ G+L++ ++ + +K S +QDF+IC
Sbjct: 131 AHIKPLAKFLSFKSIVFLTWWQGVVIAIMYSLGLLRS--PLAQSLELK---SSIQDFIIC 185
Query: 675 IEM 683
IEM
Sbjct: 186 IEM 188
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +3
Query: 21 KHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYEAYVIYNFMKY 164
K ++ ++ MVP YA+ + + L P S+Y LR+ YEA+ +Y F +Y
Sbjct: 54 KFVLGVILMVPCYAIESYVSLINPNTSVYCGILRDGYEAFAMYCFGRY 101
>03_06_0530 -
34545699-34546013,34546121-34546354,34547006-34547078,
34548226-34548299,34548852-34549004
Length = 282
Score = 61.3 bits (142), Expect = 8e-10
Identities = 24/55 (43%), Positives = 40/55 (72%)
Frame = +3
Query: 15 YXKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYEAYVIYNFMKYLLNYL 179
Y + I+R+++MVP+YA+ + + L P+ SIY +S+RE Y+A+VIYNF L ++
Sbjct: 39 YQRFIVRLIFMVPVYAVMSFLSLILPDNSIYFNSIREIYDAWVIYNFFSLCLAWV 93
>08_02_1277 +
25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 643 YLQSCRTSSYV*KWFLAAIAHHYSFSYKPYVSPL 744
Y++S R S +WF+A HH + P++SPL
Sbjct: 41 YIESLRRVSMALQWFVAGDDHH-ELIFDPFISPL 73
>12_02_1083 -
25922670-25922867,25922962-25923213,25923674-25923856,
25923945-25924015,25924058-25924169,25924524-25924583,
25924665-25924780,25925172-25925244
Length = 354
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 219 PQVYHIFPLCCLAPWEMGREFVHNCKH 299
PQV ++ CCL+ WE F++ K+
Sbjct: 288 PQVKNLATGCCLSAWECSGYFIYRAKY 314
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,889,135
Number of Sequences: 37544
Number of extensions: 391261
Number of successful extensions: 878
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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