Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0554
         (783 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55171| Best HMM Match : DUF300 (HMM E-Value=4.1e-13)                74   2e-13
SB_13457| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10)                   29   5.6  
SB_1986| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.6  
SB_19520| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  

>SB_55171| Best HMM Match : DUF300 (HMM E-Value=4.1e-13)
          Length = 254

 Score = 73.7 bits (173), Expect = 2e-13
 Identities = 36/91 (39%), Positives = 57/91 (62%)
 Frame = +3

Query: 411 YIIAINNLSQFVAMYCLVLFYKANRTELKPMKPIGKFLCIKAVVFFSFFQGVIITILVYC 590
           YI  + N+S  +A+Y L LFY+A +  L P  P+ KF  IK+V+F SF+QGV++ +    
Sbjct: 8   YITIVYNISVSLALYALFLFYQATKDLLSPYYPVLKFFTIKSVIFLSFWQGVVLAVAEKA 67

Query: 591 GVLKTIFDISDTDTVKIISSKLQDFLICIEM 683
           G+++T   IS       I++  Q+F++CIEM
Sbjct: 68  GLIRTYNHIS----AGTIAAGYQNFIVCIEM 94


>SB_13457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/43 (41%), Positives = 27/43 (62%)
 Frame = +3

Query: 558 QGVIITILVYCGVLKTIFDISDTDTVKIISSKLQDFLICIEMV 686
           QGV+I ILV  GV+          TV+ +++ +Q F+ICIEM+
Sbjct: 16  QGVLIAILVKIGVISEK-KTWVFYTVEDVANGIQSFIICIEML 57



 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +1

Query: 688 LAAIAHHYSFSYKPYV 735
           L A+AH+Y FSYKPY+
Sbjct: 58  LFAVAHYYVFSYKPYL 73


>SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10)
          Length = 1272

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +3

Query: 342 ISMICELNDVYGESDFKPNVAFPYI--IAINNLSQFVAMYCLVLFYKANRTELKPMKPI 512
           +S +   + ++GE D+ P + FP++     N L  F  + C+++ +  +  E  P  P+
Sbjct: 430 LSALAHWSGIFGEVDYLPMMVFPFVKLFQNNQLICFEMVSCVLINWCQHWFEYFPNPPV 488


>SB_1986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 989

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 31/145 (21%), Positives = 65/145 (44%), Gaps = 13/145 (8%)
 Frame = +3

Query: 309  QYTLVRPITTVISMICELNDVYGESDFKPNVAFPYIIAINNLSQFVAMYCLVLF--YK-- 476
            QY  ++ + T IS        +  S F P   + Y +A+N + +F++   L +   Y+  
Sbjct: 797  QYLTIQAVFTTIS--------FPSSPFPPRDHYVYYVALNGVGEFLSRSYLAVVGCYRPA 848

Query: 477  ------ANRTELKPMKPIGKFLCIKAVVFFSFFQGV--IITILVYCGVLK-TIFDISDTD 629
                    RT +  +  +G F       ++ FFQ V  ++ +    G +  T+F  +   
Sbjct: 849  LARKLVIKRTWVLALCLLGVFSLALCASWYRFFQSVAFVLALSFVVGAISGTVFANTLMA 908

Query: 630  TVKIISSKLQDFLICIEMVSGGDSA 704
              +I+  + Q+F  C+ +V+ G+++
Sbjct: 909  IREIVEPRHQEF--CLGLVTAGETS 931


>SB_19520| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 503

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 597 LKTIFDISDTDTVKIISSKLQDFLICIEMVSGGDSAS 707
           ++ IFD  DTD V +I + + + + CI   +  + AS
Sbjct: 102 MRDIFDDDDTDAVLLIDASISNIIRCINAFNSLNRAS 138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,366,169
Number of Sequences: 59808
Number of extensions: 469271
Number of successful extensions: 921
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)