Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0554
(783 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69792-6|CAA93669.2| 398|Caenorhabditis elegans Hypothetical pr... 150 1e-36
Z69790-5|CAA93657.2| 398|Caenorhabditis elegans Hypothetical pr... 150 1e-36
Z54342-11|CAA91146.1| 502|Caenorhabditis elegans Hypothetical p... 31 0.93
Z81133-3|CAB03443.3| 527|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z49913-4|CAA90147.1| 498|Caenorhabditis elegans Hypothetical pr... 30 1.6
U80454-6|AAB37879.1| 786|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical pr... 28 6.6
U37548-10|AAR30210.1| 1418|Caenorhabditis elegans Calcium channe... 28 6.6
U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel... 28 6.6
U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel... 28 6.6
U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel... 28 6.6
U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel... 28 6.6
U13071-3|AAA20673.1| 286|Caenorhabditis elegans Hypothetical pr... 28 6.6
AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltag... 28 6.6
AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calciu... 28 6.6
AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calciu... 28 6.6
AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calciu... 28 6.6
AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans voltage-depen... 28 6.6
>Z69792-6|CAA93669.2| 398|Caenorhabditis elegans Hypothetical
protein F40E10.6 protein.
Length = 398
Score = 150 bits (364), Expect = 1e-36
Identities = 78/225 (34%), Positives = 131/225 (58%), Gaps = 6/225 (2%)
Frame = +3
Query: 27 IIRILWMVPIYALNALIGLEFPEQSIYL--DSLRECYEAYVIYNFMKYLLNYLNDGHDLE 200
I+RIL++VPIYA ++ + L F ++Y+ +S+R+CYEA+VIY+F+ YL ++
Sbjct: 52 IVRILFIVPIYAFDSWLSLIFFSDNVYIYFNSIRDCYEAFVIYSFLSLCYEYLGGESNIM 111
Query: 201 AVLETKP--QVYHIFPLCCLAPWEMGREFVHNCKHGILQYTLVRPITTVISMICELNDVY 374
A + KP ++ CCLA + EF+ CK LQ+ ++PI VI+++ Y
Sbjct: 112 AEIRGKPIRPTNYLTCTCCLAGKQYTIEFLRFCKQATLQFCFIKPIMAVITLMLTAIGKY 171
Query: 375 GESDFKPNVAFPYIIAINNLSQFVAMYCLVLFYKANRTELKPMKPIGKFLCIKAVVFFSF 554
+ ++ + + YI + N+S +A+Y + LFY A R L P +P+ KFL +K+V+F SF
Sbjct: 172 EDGNWSLDQGYIYITLVYNVSISLALYGMFLFYAATRDLLSPYRPVLKFLTVKSVIFLSF 231
Query: 555 FQGVIITILVYCGVLKTIFDISDTDTV--KIISSKLQDFLICIEM 683
+QG +I IL + I+D + + +++ Q+F ICIEM
Sbjct: 232 WQGFLIAILGATSAIDPIYDAEGREVIGRGTVAAGWQNFFICIEM 276
>Z69790-5|CAA93657.2| 398|Caenorhabditis elegans Hypothetical
protein F40E10.6 protein.
Length = 398
Score = 150 bits (364), Expect = 1e-36
Identities = 78/225 (34%), Positives = 131/225 (58%), Gaps = 6/225 (2%)
Frame = +3
Query: 27 IIRILWMVPIYALNALIGLEFPEQSIYL--DSLRECYEAYVIYNFMKYLLNYLNDGHDLE 200
I+RIL++VPIYA ++ + L F ++Y+ +S+R+CYEA+VIY+F+ YL ++
Sbjct: 52 IVRILFIVPIYAFDSWLSLIFFSDNVYIYFNSIRDCYEAFVIYSFLSLCYEYLGGESNIM 111
Query: 201 AVLETKP--QVYHIFPLCCLAPWEMGREFVHNCKHGILQYTLVRPITTVISMICELNDVY 374
A + KP ++ CCLA + EF+ CK LQ+ ++PI VI+++ Y
Sbjct: 112 AEIRGKPIRPTNYLTCTCCLAGKQYTIEFLRFCKQATLQFCFIKPIMAVITLMLTAIGKY 171
Query: 375 GESDFKPNVAFPYIIAINNLSQFVAMYCLVLFYKANRTELKPMKPIGKFLCIKAVVFFSF 554
+ ++ + + YI + N+S +A+Y + LFY A R L P +P+ KFL +K+V+F SF
Sbjct: 172 EDGNWSLDQGYIYITLVYNVSISLALYGMFLFYAATRDLLSPYRPVLKFLTVKSVIFLSF 231
Query: 555 FQGVIITILVYCGVLKTIFDISDTDTV--KIISSKLQDFLICIEM 683
+QG +I IL + I+D + + +++ Q+F ICIEM
Sbjct: 232 WQGFLIAILGATSAIDPIYDAEGREVIGRGTVAAGWQNFFICIEM 276
>Z54342-11|CAA91146.1| 502|Caenorhabditis elegans Hypothetical
protein C08H9.5 protein.
Length = 502
Score = 31.1 bits (67), Expect = 0.93
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 153 FMKYLLNYLNDGHDLEAVLETKPQVYHIFPLC 248
+ KY+L+YLN+G L ++Y++ LC
Sbjct: 412 YWKYVLSYLNEGKRLAQPAHADAEIYNVMKLC 443
>Z81133-3|CAB03443.3| 527|Caenorhabditis elegans Hypothetical
protein T28B8.5 protein.
Length = 527
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 135 AYVIYNFMKYLLNYLNDGHDLEAVLETKPQVYHIFPLCCLAPWEM 269
A I+ F+ L NYL+ + E L+ + + +C L PW++
Sbjct: 48 ALFIWQFITLLTNYLSFSVNTETTLQFAERTFPTVTICHLNPWKL 92
>Z49913-4|CAA90147.1| 498|Caenorhabditis elegans Hypothetical
protein ZK938.5 protein.
Length = 498
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 150 NFMKYLLNYLNDGHDLEAVLETKPQVYHIFPLC 248
++ KY+L YLN+G L ++Y++ LC
Sbjct: 407 SYCKYVLAYLNEGKRLAQPAHADAEIYNVMKLC 439
>U80454-6|AAB37879.1| 786|Caenorhabditis elegans Hypothetical
protein T16A1.2 protein.
Length = 786
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 3 LSLRYXKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYEAY 140
++L+ +IR W IY++N + +EF E + L L + Y
Sbjct: 657 INLQLENRLIRATWWDDIYSVNKTVKVEFEEAAFALSKLDLKFSVY 702
>Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical
protein F57C7.4 protein.
Length = 1484
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 221 SSISYISIVLPSTMGNGEGIC 283
S++ YI LPST GNG C
Sbjct: 797 STVKYIQFFLPSTSGNGSDEC 817
>U37548-10|AAR30210.1| 1418|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform f protein.
Length = 1418
Score = 28.3 bits (60), Expect = 6.6
Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Frame = +3
Query: 441 FVAMYCLVLFYKANRTELKPMKPIGKFLCIKAVVFFSFFQGVIITILVY--CGVLKTIFD 614
F+ + C+ L + R + P +FL I +F F G ++ ++ C + + +
Sbjct: 1120 FIGINCITLAME--RPSIPPDSFERQFLHISGYIFTVIFTGEMMMKVIANGCFIGQAAYF 1177
Query: 615 ISDTDTVKIISSKLQDFLICIEMVSGGDSASL*FLVQALRVAIGTRRLRVLAR 773
+ + I + I E+++ GDS + +++ LR+ R LRV+ R
Sbjct: 1178 KDGWNILDGILVVISLINIAFELLATGDSPKIFGVIRVLRLLRALRPLRVINR 1230
>U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform c protein.
Length = 1852
Score = 28.3 bits (60), Expect = 6.6
Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Frame = +3
Query: 441 FVAMYCLVLFYKANRTELKPMKPIGKFLCIKAVVFFSFFQGVIITILVY--CGVLKTIFD 614
F+ + C+ L + R + P +FL I +F F G ++ ++ C + + +
Sbjct: 1120 FIGINCITLAME--RPSIPPDSFERQFLHISGYIFTVIFTGEMMMKVIANGCFIGQAAYF 1177
Query: 615 ISDTDTVKIISSKLQDFLICIEMVSGGDSASL*FLVQALRVAIGTRRLRVLAR 773
+ + I + I E+++ GDS + +++ LR+ R LRV+ R
Sbjct: 1178 KDGWNILDGILVVISLINIAFELLATGDSPKIFGVIRVLRLLRALRPLRVINR 1230
>U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform a protein.
Length = 1837
Score = 28.3 bits (60), Expect = 6.6
Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Frame = +3
Query: 441 FVAMYCLVLFYKANRTELKPMKPIGKFLCIKAVVFFSFFQGVIITILVY--CGVLKTIFD 614
F+ + C+ L + R + P +FL I +F F G ++ ++ C + + +
Sbjct: 1120 FIGINCITLAME--RPSIPPDSFERQFLHISGYIFTVIFTGEMMMKVIANGCFIGQAAYF 1177
Query: 615 ISDTDTVKIISSKLQDFLICIEMVSGGDSASL*FLVQALRVAIGTRRLRVLAR 773
+ + I + I E+++ GDS + +++ LR+ R LRV+ R
Sbjct: 1178 KDGWNILDGILVVISLINIAFELLATGDSPKIFGVIRVLRLLRALRPLRVINR 1230
>U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform d protein.
Length = 1885
Score = 28.3 bits (60), Expect = 6.6
Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Frame = +3
Query: 441 FVAMYCLVLFYKANRTELKPMKPIGKFLCIKAVVFFSFFQGVIITILVY--CGVLKTIFD 614
F+ + C+ L + R + P +FL I +F F G ++ ++ C + + +
Sbjct: 1168 FIGINCITLAME--RPSIPPDSFERQFLHISGYIFTVIFTGEMMMKVIANGCFIGQAAYF 1225
Query: 615 ISDTDTVKIISSKLQDFLICIEMVSGGDSASL*FLVQALRVAIGTRRLRVLAR 773
+ + I + I E+++ GDS + +++ LR+ R LRV+ R
Sbjct: 1226 KDGWNILDGILVVISLINIAFELLATGDSPKIFGVIRVLRLLRALRPLRVINR 1278
>U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform e protein.
Length = 1844
Score = 28.3 bits (60), Expect = 6.6
Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Frame = +3
Query: 441 FVAMYCLVLFYKANRTELKPMKPIGKFLCIKAVVFFSFFQGVIITILVY--CGVLKTIFD 614
F+ + C+ L + R + P +FL I +F F G ++ ++ C + + +
Sbjct: 1127 FIGINCITLAME--RPSIPPDSFERQFLHISGYIFTVIFTGEMMMKVIANGCFIGQAAYF 1184
Query: 615 ISDTDTVKIISSKLQDFLICIEMVSGGDSASL*FLVQALRVAIGTRRLRVLAR 773
+ + I + I E+++ GDS + +++ LR+ R LRV+ R
Sbjct: 1185 KDGWNILDGILVVISLINIAFELLATGDSPKIFGVIRVLRLLRALRPLRVINR 1237
>U13071-3|AAA20673.1| 286|Caenorhabditis elegans Hypothetical
protein T22F7.4 protein.
Length = 286
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = -3
Query: 652 FEDIILTVSVSEMSNIVFKTPQ*TNMVIITP----WKKEKKTTAFIHKNFPIGFIGLSSV 485
F D + + + + N F P+ T +P WKKEK + + KN+ G I +S +
Sbjct: 112 FTDDQIMIIIDRICNKGFNCPKDTYATFTSPGRSTWKKEKIFESNLIKNYKNGLIEMSEI 171
>AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltage
sensitive calciumchannel alpha1 subunit isoform D
protein.
Length = 1844
Score = 28.3 bits (60), Expect = 6.6
Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Frame = +3
Query: 441 FVAMYCLVLFYKANRTELKPMKPIGKFLCIKAVVFFSFFQGVIITILVY--CGVLKTIFD 614
F+ + C+ L + R + P +FL I +F F G ++ ++ C + + +
Sbjct: 1127 FIGINCITLAME--RPSIPPDSFERQFLHISGYIFTVIFTGEMMMKVIANGCFIGQAAYF 1184
Query: 615 ISDTDTVKIISSKLQDFLICIEMVSGGDSASL*FLVQALRVAIGTRRLRVLAR 773
+ + I + I E+++ GDS + +++ LR+ R LRV+ R
Sbjct: 1185 KDGWNILDGILVVISLINIAFELLATGDSPKIFGVIRVLRLLRALRPLRVINR 1237
>AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calcium
channel alpha1 subunitisoform C protein.
Length = 1852
Score = 28.3 bits (60), Expect = 6.6
Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Frame = +3
Query: 441 FVAMYCLVLFYKANRTELKPMKPIGKFLCIKAVVFFSFFQGVIITILVY--CGVLKTIFD 614
F+ + C+ L + R + P +FL I +F F G ++ ++ C + + +
Sbjct: 1120 FIGINCITLAME--RPSIPPDSFERQFLHISGYIFTVIFTGEMMMKVIANGCFIGQAAYF 1177
Query: 615 ISDTDTVKIISSKLQDFLICIEMVSGGDSASL*FLVQALRVAIGTRRLRVLAR 773
+ + I + I E+++ GDS + +++ LR+ R LRV+ R
Sbjct: 1178 KDGWNILDGILVVISLINIAFELLATGDSPKIFGVIRVLRLLRALRPLRVINR 1230
>AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calcium
channel alpha1 subunitisoform B protein.
Length = 1885
Score = 28.3 bits (60), Expect = 6.6
Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Frame = +3
Query: 441 FVAMYCLVLFYKANRTELKPMKPIGKFLCIKAVVFFSFFQGVIITILVY--CGVLKTIFD 614
F+ + C+ L + R + P +FL I +F F G ++ ++ C + + +
Sbjct: 1168 FIGINCITLAME--RPSIPPDSFERQFLHISGYIFTVIFTGEMMMKVIANGCFIGQAAYF 1225
Query: 615 ISDTDTVKIISSKLQDFLICIEMVSGGDSASL*FLVQALRVAIGTRRLRVLAR 773
+ + I + I E+++ GDS + +++ LR+ R LRV+ R
Sbjct: 1226 KDGWNILDGILVVISLINIAFELLATGDSPKIFGVIRVLRLLRALRPLRVINR 1278
>AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calcium
channel alpha1 subunitisoform A protein.
Length = 1837
Score = 28.3 bits (60), Expect = 6.6
Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Frame = +3
Query: 441 FVAMYCLVLFYKANRTELKPMKPIGKFLCIKAVVFFSFFQGVIITILVY--CGVLKTIFD 614
F+ + C+ L + R + P +FL I +F F G ++ ++ C + + +
Sbjct: 1120 FIGINCITLAME--RPSIPPDSFERQFLHISGYIFTVIFTGEMMMKVIANGCFIGQAAYF 1177
Query: 615 ISDTDTVKIISSKLQDFLICIEMVSGGDSASL*FLVQALRVAIGTRRLRVLAR 773
+ + I + I E+++ GDS + +++ LR+ R LRV+ R
Sbjct: 1178 KDGWNILDGILVVISLINIAFELLATGDSPKIFGVIRVLRLLRALRPLRVINR 1230
>AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans voltage-dependent
calcium channelalpha13 subunit protein.
Length = 1837
Score = 28.3 bits (60), Expect = 6.6
Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Frame = +3
Query: 441 FVAMYCLVLFYKANRTELKPMKPIGKFLCIKAVVFFSFFQGVIITILVY--CGVLKTIFD 614
F+ + C+ L + R + P +FL I +F F G ++ ++ C + + +
Sbjct: 1120 FIGINCITLAME--RPSIPPDSFERQFLHISGYIFTVIFTGEMMMKVIANGCFIGQAAYF 1177
Query: 615 ISDTDTVKIISSKLQDFLICIEMVSGGDSASL*FLVQALRVAIGTRRLRVLAR 773
+ + I + I E+++ GDS + +++ LR+ R LRV+ R
Sbjct: 1178 KDGWNILDGILVVISLINIAFELLATGDSPKIFGVIRVLRLLRALRPLRVINR 1230
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,645,386
Number of Sequences: 27780
Number of extensions: 369447
Number of successful extensions: 933
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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