Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0554
(783 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g26740.2 68418.m03164 expressed protein contains Pfam profile... 157 6e-39
At5g26740.1 68418.m03163 expressed protein contains Pfam profile... 157 6e-39
At3g05940.1 68416.m00676 expressed protein contains Pfam profile... 157 8e-39
At1g77220.1 68414.m08994 expressed protein contains Pfam profile... 152 3e-37
At4g38360.2 68417.m05424 expressed protein contains Pfam profile... 136 2e-32
At4g38360.1 68417.m05423 expressed protein contains Pfam profile... 134 8e-32
At1g11200.1 68414.m01283 expressed protein contains Pfam profile... 122 4e-28
At4g21570.1 68417.m03120 expressed protein contains Pfam profile... 116 2e-26
At1g23070.1 68414.m02884 hypothetical protein contains Pfam prof... 107 6e-24
At5g35180.1 68418.m04169 expressed protein 32 0.49
At2g46160.1 68415.m05740 zinc finger (C3HC4-type RING finger) fa... 30 2.0
At5g04480.1 68418.m00447 expressed protein 29 4.6
At2g16365.1 68415.m06032 F-box family protein contains Pfam:PF00... 28 6.1
At1g11460.1 68414.m01316 nodulin MtN21 family protein similar to... 28 8.0
>At5g26740.2 68418.m03164 expressed protein contains Pfam profile
PF03619: Domain of unknown function
Length = 422
Score = 157 bits (382), Expect = 6e-39
Identities = 77/225 (34%), Positives = 129/225 (57%), Gaps = 1/225 (0%)
Frame = +3
Query: 15 YXKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYEAYVIYNFMKYLLNYLNDGHD 194
Y ++I+RI++MVP+YA + + L P+ SIY DS+RE YEA+VIYNF+ L ++
Sbjct: 40 YQRYIVRIIFMVPVYAFMSFLSLVLPKSSIYFDSIREVYEAWVIYNFLSLCLAWVGGPGS 99
Query: 195 LEAVLETKP-QVYHIFPLCCLAPWEMGREFVHNCKHGILQYTLVRPITTVISMICELNDV 371
+ L + + CC P + F+ CK G LQ+ +++PI ++++
Sbjct: 100 VVLSLSGRSLKPSWSLMTCCFPPLTLDGRFIRRCKQGCLQFVILKPILVAVTLVLYAKGK 159
Query: 372 YGESDFKPNVAFPYIIAINNLSQFVAMYCLVLFYKANRTELKPMKPIGKFLCIKAVVFFS 551
Y + +F P+ A+ Y+ I +S VA+Y LVLFY A R L+P P+ KF+ IK+VVF +
Sbjct: 160 YKDGNFNPDQAYLYLTIIYTISYTVALYALVLFYMACRDLLQPFNPVPKFVIIKSVVFLT 219
Query: 552 FFQGVIITILVYCGVLKTIFDISDTDTVKIISSKLQDFLICIEMV 686
++QGV++ + G +K+ ++ Q+F+IC+EM+
Sbjct: 220 YWQGVLVFLAAKSGFIKS----------AEAAAHFQNFIICVEML 254
>At5g26740.1 68418.m03163 expressed protein contains Pfam profile
PF03619: Domain of unknown function
Length = 422
Score = 157 bits (382), Expect = 6e-39
Identities = 77/225 (34%), Positives = 129/225 (57%), Gaps = 1/225 (0%)
Frame = +3
Query: 15 YXKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYEAYVIYNFMKYLLNYLNDGHD 194
Y ++I+RI++MVP+YA + + L P+ SIY DS+RE YEA+VIYNF+ L ++
Sbjct: 40 YQRYIVRIIFMVPVYAFMSFLSLVLPKSSIYFDSIREVYEAWVIYNFLSLCLAWVGGPGS 99
Query: 195 LEAVLETKP-QVYHIFPLCCLAPWEMGREFVHNCKHGILQYTLVRPITTVISMICELNDV 371
+ L + + CC P + F+ CK G LQ+ +++PI ++++
Sbjct: 100 VVLSLSGRSLKPSWSLMTCCFPPLTLDGRFIRRCKQGCLQFVILKPILVAVTLVLYAKGK 159
Query: 372 YGESDFKPNVAFPYIIAINNLSQFVAMYCLVLFYKANRTELKPMKPIGKFLCIKAVVFFS 551
Y + +F P+ A+ Y+ I +S VA+Y LVLFY A R L+P P+ KF+ IK+VVF +
Sbjct: 160 YKDGNFNPDQAYLYLTIIYTISYTVALYALVLFYMACRDLLQPFNPVPKFVIIKSVVFLT 219
Query: 552 FFQGVIITILVYCGVLKTIFDISDTDTVKIISSKLQDFLICIEMV 686
++QGV++ + G +K+ ++ Q+F+IC+EM+
Sbjct: 220 YWQGVLVFLAAKSGFIKS----------AEAAAHFQNFIICVEML 254
>At3g05940.1 68416.m00676 expressed protein contains Pfam profile
PF03619: Domain of unknown function
Length = 422
Score = 157 bits (381), Expect = 8e-39
Identities = 78/227 (34%), Positives = 134/227 (59%), Gaps = 3/227 (1%)
Frame = +3
Query: 15 YXKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYEAYVIYNFMKYLLNYLNDGHD 194
Y ++I+RI++MVP+YAL + + L P+ SIY +S+RE YEA+VIYNF+ L ++
Sbjct: 40 YQRYIVRIVFMVPVYALMSFLALVLPKSSIYFNSIREVYEAWVIYNFLSLCLAWVGGPGS 99
Query: 195 LEAVL---ETKPQVYHIFPLCCLAPWEMGREFVHNCKHGILQYTLVRPITTVISMICELN 365
+ L KP +H+ CC+ P + F+ CK G LQ+ +++PI ++++
Sbjct: 100 VVISLTGRSLKPS-WHLMT-CCIPPLPLDGRFIRRCKQGCLQFVILKPILVAVTLVLYAK 157
Query: 366 DVYGESDFKPNVAFPYIIAINNLSQFVAMYCLVLFYKANRTELKPMKPIGKFLCIKAVVF 545
Y + +F P+ ++ Y+ I +S VA+Y LVLFY A + L+P P+ KF+ IK+VVF
Sbjct: 158 GKYKDGNFSPDQSYLYLTIIYTISYTVALYALVLFYVACKDLLQPFNPVPKFVIIKSVVF 217
Query: 546 FSFFQGVIITILVYCGVLKTIFDISDTDTVKIISSKLQDFLICIEMV 686
+++QGV++ + G ++ D + + Q+F+IC+EM+
Sbjct: 218 LTYWQGVLVFLFAKSGFIR------DEEEAAL----FQNFIICVEML 254
>At1g77220.1 68414.m08994 expressed protein contains Pfam profile
PF03619: Domain of unknown function
Length = 484
Score = 152 bits (368), Expect = 3e-37
Identities = 83/239 (34%), Positives = 137/239 (57%), Gaps = 18/239 (7%)
Frame = +3
Query: 21 KHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYEAYVIYNFMKYLLNYLNDGHD-- 194
K +I ++ MVP+YA+ + + L E + + +R+CYEA+ +Y F +YL+ L DG +
Sbjct: 75 KFLIGLILMVPVYAVESFLSLVNSEAAFNCEVIRDCYEAFALYCFERYLIACL-DGEERT 133
Query: 195 ---LE---AVLETKPQ---------VYHIFPL-CCLAPWEMGREFVHNCKHGILQYTLVR 326
+E + ++ P V H FP+ C + W +G +F H K GI+QY +++
Sbjct: 134 IEFMEQQTVITQSTPLLEGTCSYGVVEHPFPMNCFVKDWSLGPQFYHAVKIGIVQYMILK 193
Query: 327 PITTVISMICELNDVYGESDFKPNVAFPYIIAINNLSQFVAMYCLVLFYKANRTELKPMK 506
I +++MI E VYGE F N +PY+ + N SQ A+YCLV FY + +L P+K
Sbjct: 194 MICALLAMILEAFGVYGEGKFAWNYGYPYLAVVLNFSQTWALYCLVQFYNVIKDKLAPIK 253
Query: 507 PIGKFLCIKAVVFFSFFQGVIITILVYCGVLKTIFDISDTDTVKIISSKLQDFLICIEM 683
P+ KFL K++VF +++QG+I+ L G++K K + +++QD++ICIEM
Sbjct: 254 PLAKFLTFKSIVFLTWWQGIIVAFLFSMGLVK-------GSLAKELKTRIQDYIICIEM 305
>At4g38360.2 68417.m05424 expressed protein contains Pfam profile
PF03619: Domain of unknown function
Length = 485
Score = 136 bits (328), Expect = 2e-32
Identities = 80/238 (33%), Positives = 133/238 (55%), Gaps = 17/238 (7%)
Frame = +3
Query: 21 KHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYEAYVIYNFMKYLLNYLN-DGHDL 197
K +I ++ MVP Y++ + L P S+ LR+CYE++ +Y F +YL+ + + +
Sbjct: 53 KFLIGVILMVPCYSIESFASLVKPSISVDCGILRDCYESFAMYCFGRYLVACIGGEERTI 112
Query: 198 E------------AVLETKPQ---VYHIFPL-CCLAPWEMGREFVHNCKHGILQYTLVRP 329
E +L+ K + + H FP+ L PW + F K GI+QY +++
Sbjct: 113 EFMERQGRKSFKTPLLDHKDEKGIIKHPFPMNLFLKPWRLSPWFYQVVKFGIVQYMIIKS 172
Query: 330 ITTVISMICELNDVYGESDFKPNVAFPYIIAINNLSQFVAMYCLVLFYKANRTELKPMKP 509
+T + ++I E VY E +FK +PY+ + N SQ A+YCLV FY A + EL ++P
Sbjct: 173 LTALTALILEAFGVYCEGEFKWGCGYPYLAVVLNFSQSWALYCLVQFYGATKDELAHIQP 232
Query: 510 IGKFLCIKAVVFFSFFQGVIITILVYCGVLKTIFDISDTDTVKIISSKLQDFLICIEM 683
+ KFL K++VF +++QGV I +L G+ K+ I+ + +K + +QDF+ICIEM
Sbjct: 233 LAKFLTFKSIVFLTWWQGVAIALLSSLGLFKS--SIAQSLQLK---TSVQDFIICIEM 285
>At4g38360.1 68417.m05423 expressed protein contains Pfam profile
PF03619: Domain of unknown function
Length = 304
Score = 134 bits (323), Expect = 8e-32
Identities = 79/237 (33%), Positives = 132/237 (55%), Gaps = 17/237 (7%)
Frame = +3
Query: 21 KHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYEAYVIYNFMKYLLNYLN-DGHDL 197
K +I ++ MVP Y++ + L P S+ LR+CYE++ +Y F +YL+ + + +
Sbjct: 53 KFLIGVILMVPCYSIESFASLVKPSISVDCGILRDCYESFAMYCFGRYLVACIGGEERTI 112
Query: 198 E------------AVLETKPQ---VYHIFPL-CCLAPWEMGREFVHNCKHGILQYTLVRP 329
E +L+ K + + H FP+ L PW + F K GI+QY +++
Sbjct: 113 EFMERQGRKSFKTPLLDHKDEKGIIKHPFPMNLFLKPWRLSPWFYQVVKFGIVQYMIIKS 172
Query: 330 ITTVISMICELNDVYGESDFKPNVAFPYIIAINNLSQFVAMYCLVLFYKANRTELKPMKP 509
+T + ++I E VY E +FK +PY+ + N SQ A+YCLV FY A + EL ++P
Sbjct: 173 LTALTALILEAFGVYCEGEFKWGCGYPYLAVVLNFSQSWALYCLVQFYGATKDELAHIQP 232
Query: 510 IGKFLCIKAVVFFSFFQGVIITILVYCGVLKTIFDISDTDTVKIISSKLQDFLICIE 680
+ KFL K++VF +++QGV I +L G+ K+ I+ + +K + +QDF+ICIE
Sbjct: 233 LAKFLTFKSIVFLTWWQGVAIALLSSLGLFKS--SIAQSLQLK---TSVQDFIICIE 284
>At1g11200.1 68414.m01283 expressed protein contains Pfam profile
PF03619: Domain of unknown function
Length = 295
Score = 122 bits (293), Expect = 4e-28
Identities = 69/228 (30%), Positives = 126/228 (55%), Gaps = 8/228 (3%)
Frame = +3
Query: 27 IIRILWMVPIYALNALIGLEFPEQS----IYLDSLRECYEAYVIYNFMKYLLNYLNDGHD 194
I+ I+ M P+YA+N+ +GL + S ++LD+++ECYEA VI F+ + +Y+N
Sbjct: 48 ILIIVLMAPVYAINSFVGLLDAKGSKPFFMFLDAVKECYEALVIAKFLALMYSYVNISMS 107
Query: 195 LEAVLETKP--QVYHIFPLCCLAPWEMGREFV--HNCKHGILQYTLVRPITTVISMICEL 362
+ + +++H FP+ P +++ K Q+ ++RP+ +++ + ++
Sbjct: 108 ARIIPDEFKGREIHHSFPMTLFVPRTTHLDYLTLKQLKQWTWQFCIIRPVCSILMITLQI 167
Query: 363 NDVYGESDFKPNVAFPYIIAINNLSQFVAMYCLVLFYKANRTELKPMKPIGKFLCIKAVV 542
+Y P AI N+S +A+Y LV FY EL+P KP+ KF+C+K +V
Sbjct: 168 LGIY------PVWLSWIFTAILNVSVSLALYSLVKFYHVFAKELEPHKPLTKFMCVKGIV 221
Query: 543 FFSFFQGVIITILVYCGVLKTIFDISDTDTVKIISSKLQDFLICIEMV 686
FF F+QG+++ ILV G++K+ + D + LQ+ L+C+EM+
Sbjct: 222 FFCFWQGIVLKILVGLGLIKSHHFWLEVDQ---LEEALQNVLVCLEMI 266
>At4g21570.1 68417.m03120 expressed protein contains Pfam profile
PF03619: Domain of unknown function
Length = 294
Score = 116 bits (279), Expect = 2e-26
Identities = 74/230 (32%), Positives = 125/230 (54%), Gaps = 8/230 (3%)
Frame = +3
Query: 21 KHIIRILWMVPIYALNALIGLEFPEQS----IYLDSLRECYEAYVIYNFMKYLLNYLNDG 188
K I+ I+ M PIYA+ + IGL + S ++L+S++ECYEA VI F+ + +YLN
Sbjct: 46 KAILIIVLMAPIYAVVSFIGLLEVKGSETFFLFLESIKECYEALVIAKFLALMYSYLNIS 105
Query: 189 HDLEAVLE--TKPQVYHIFPLCCLAPW--EMGREFVHNCKHGILQYTLVRPITTVISMIC 356
+ + +++H FP+ P + R + K+ Q+ ++RP+ + + +
Sbjct: 106 MSKNILPDGIKGREIHHSFPMTLFQPHVVRLDRHTLKLLKYWTWQFVVIRPVCSTLMIAL 165
Query: 357 ELNDVYGESDFKPNVAFPYIIAINNLSQFVAMYCLVLFYKANRTELKPMKPIGKFLCIKA 536
+L Y +++ + I +N S +A+Y LV+FY EL P P+ KFLCIK
Sbjct: 166 QLIGFYPSW-----LSWTFTIIVN-FSVSLALYSLVIFYHVFAKELAPHNPLAKFLCIKG 219
Query: 537 VVFFSFFQGVIITILVYCGVLKTIFDISDTDTVKIISSKLQDFLICIEMV 686
+VFF F+QG+ + ILV G +K+ + V+ I +Q+ L+C+EMV
Sbjct: 220 IVFFVFWQGIALDILVAMGFIKSHHFWLE---VEQIQEAIQNVLVCLEMV 266
>At1g23070.1 68414.m02884 hypothetical protein contains Pfam profile
PF03619: Domain of unknown function
Length = 414
Score = 107 bits (258), Expect = 6e-24
Identities = 76/247 (30%), Positives = 121/247 (48%), Gaps = 26/247 (10%)
Frame = +3
Query: 21 KHIIRILWMVPIYALNALIGLEFPEQSIYLDSLR---ECYEAYVIYNFMKYLLNYLN--- 182
K I+ +L+MVP+YA ++I L + S+ D LR E + Y +++ L L+
Sbjct: 49 KWIVSVLFMVPVYATESIISLSNSKFSLPCDILRNCYEAFALYSFGSYLVACLGELSKIP 108
Query: 183 --------------DGHDLEAVLET------KPQVYHIFPLCCLAPWEMGREFVHNCKHG 302
+ + +LE K + + F P+ +GRE K G
Sbjct: 109 NEWSGGERRVVEYLENESKKPLLEEGANESKKKKKKNSFWKFLCDPYVLGRELFVIEKFG 168
Query: 303 ILQYTLVRPITTVISMICELNDVYGESDFKPNVAFPYIIAINNLSQFVAMYCLVLFYKAN 482
++QY +++ ++ + EL VYG+ +FK +PYI+ + N SQ A++CLV FY
Sbjct: 169 LVQYMILKTFCAFLTFLLELLGVYGDGEFKWYYGYPYIVVVLNFSQMWALFCLVQFYNVT 228
Query: 483 RTELKPMKPIGKFLCIKAVVFFSFFQGVIITILVYCGVLKTIFDISDTDTVKIISSKLQD 662
LK +KP+ KF+ KA+VF +++QG I +L Y G+L + LQD
Sbjct: 229 HERLKEIKPLAKFISFKAIVFATWWQGFGIALLCYYGIL---------PKEGRFQNGLQD 279
Query: 663 FLICIEM 683
FLICIEM
Sbjct: 280 FLICIEM 286
>At5g35180.1 68418.m04169 expressed protein
Length = 778
Score = 31.9 bits (69), Expect = 0.49
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 390 KPNVAFPYIIAINNLSQFVAMYCLVLFYKANRTELKPMKPIGKFL 524
+P P+I+ IN YCLVL+Y A+R + +GKF+
Sbjct: 620 EPGKKLPFILVINLQVPAKPNYCLVLYYAADR-PVNKTSSLGKFV 663
>At2g46160.1 68415.m05740 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 zinc finger protein
ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 214
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +3
Query: 204 VLETKPQVYHIFPLCCLAPWEMGREFVHNCKHGILQYTLVRPITTVISMICELN 365
+L P+ H F LCCL W C++ L P++T +S + L+
Sbjct: 150 MLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVPLS 203
>At5g04480.1 68418.m00447 expressed protein
Length = 1050
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2
Query: 575 GDYHSLEKREKNNSFYT*EFPNRLHWFELSSVCLVKEYQTVHSYEL 438
G S + N F + E P++L W L + +EY+ V S EL
Sbjct: 608 GVIESTNPVDNNTLFVSDELPSKLDWDVLEEIEGAEEYEKVESEEL 653
>At2g16365.1 68415.m06032 F-box family protein contains Pfam:PF00646
F-box domain
Length = 778
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = -2
Query: 629 ISIRNVKYRF*DTAVNQYGDYHSLEKREKNNSFYT*EFPNRLHWFELS 486
+ I V + + + +G Y+ + EK S Y FP +L W E++
Sbjct: 587 MGINKVLFNSLTSPIIPFGQYYEITYIEKRPSEYRFGFPYKLEWVEIT 634
>At1g11460.1 68414.m01316 nodulin MtN21 family protein similar to
MtN21 [Medicago truncatula] GI:2598575; contains Pfam
profile PF00892: Integral membrane protein
Length = 337
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 474 KANRTELKPMKPIGKFLCIKAVVFFSFFQG 563
K+ RT+ +K +G +CI +F +F++G
Sbjct: 133 KSLRTQAGMIKVMGTIICISGALFLTFYKG 162
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,567,347
Number of Sequences: 28952
Number of extensions: 338425
Number of successful extensions: 792
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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