Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0550
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    23   1.8  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   2.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.4  
AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.      22   5.5  
AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.      21   9.7  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -3

Query: 179 DAICSVYCALYLSHNVIRFCIYSGHGFISETAL 81
           DA+ SVY +L  +  +  F IY+    ++   +
Sbjct: 66  DALKSVYASLLCTEKIFLFAIYTNLSILTTVTI 98


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 251 VVFQALASTVFPSGNVTTTLISGLDAICSVY 159
           V+ Q++ S  FP       L+SGL A+C +Y
Sbjct: 155 VMIQSV-SFAFPINLSVPVLLSGLIAMCGMY 184


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 251 VVFQALASTVFPSGNVTTTLISGLDAICSVY 159
           V+ Q++ S  FP       L+SGL A+C +Y
Sbjct: 388 VMIQSV-SFAFPINLSVPVLLSGLIAMCGMY 417


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 251 VVFQALASTVFPSGNVTTTLISGLDAICSVY 159
           V+ Q++ S  FP       L+SGL A+C +Y
Sbjct: 388 VMIQSV-SFAFPINLSVPVLLSGLIAMCGMY 417


>AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.
          Length = 515

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 523 KGISSTDFNVLEGLIKKIAKEKQPFERLE-LTKEQLLEM 636
           +GI  T   +   L  +   EK+ FERL  L  ++LL++
Sbjct: 222 RGIPDTSKQLAAALGMQTTNEKEIFERLSVLPVDKLLQI 260


>AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 523 KGISSTDFNVLEGLIKKIAKEKQPFERLEL 612
           +GI  T   +   L  +   EK+ FERL +
Sbjct: 224 RGIPDTSKQLAAALGMQTTNEKEIFERLSI 253


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,846
Number of Sequences: 336
Number of extensions: 3479
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)