Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0550
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0069 - 11880841-11880936,11881150-11881221,11881263-118813...   147   8e-36
02_04_0121 - 19943988-19944251,19944534-19944734,19944802-199451...    38   0.006
07_01_0057 + 431084-431105,431149-431297,431380-431526,431622-43...    30   2.0  

>08_02_0069 -
           11880841-11880936,11881150-11881221,11881263-11881343,
           11881471-11881542,11882549-11882770,11882849-11882941,
           11883509-11883601,11884546-11884632,11884958-11884990,
           11885091-11885185,11886590-11886674,11886778-11886864,
           11887757-11887846,11887929-11888057,11888668-11888757,
           11888849-11888908,11889074-11889311,11889852-11890054
          Length = 641

 Score =  147 bits (356), Expect = 8e-36
 Identities = 67/153 (43%), Positives = 101/153 (66%), Gaps = 2/153 (1%)
 Frame = +1

Query: 121 QKRITLWDKYKAQYTEQIASKPDISVVVTLPDGKTVEAKAWKTTPYDVAKGISQGLADAT 300
           QKRI  +++ +A+   +  +     + +TLPDG   + K W +TP D+AK IS GLA++ 
Sbjct: 42  QKRIRQFEEIQAKQALERLNIGGEPIRITLPDGAVKDGKKWISTPMDIAKEISSGLANSC 101

Query: 301 IIARVNNELWDLDRPL*GDCKLELLRWDNTDAQAVFWHSSAHMLGEAMERVYGGCLCYGP 480
           +IA+VN  LWD+ RPL GDC+L+L ++D+ + +  FWHSSAH+LGE++ER YG  LC GP
Sbjct: 102 LIAQVNGTLWDMTRPLEGDCELKLFKFDSNEGRDTFWHSSAHILGESLERAYGCKLCIGP 161

Query: 481 PIE--EGFYYDMYYPEKGISSTDFNVLEGLIKK 573
                EGFYYD YY +  ++ T F +++   +K
Sbjct: 162 CTTRGEGFYYDAYYNDLTLNETHFGIIDAQAQK 194


>02_04_0121 -
           19943988-19944251,19944534-19944734,19944802-19945124,
           19945283-19945316,19945479-19945856,19946425-19946678,
           19946791-19946938,19947052-19947198,19947287-19947664
          Length = 708

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 22/92 (23%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
 Frame = +1

Query: 421 AHMLGEAMERVYGGC-LCYGPPIEEGFYYDMYYPEKGISSTDFNVLEGLIKKIAKEKQPF 597
           AH++  A+++++    +  GP I+ GFYYD  +  + ++  D   ++  + +I ++  P 
Sbjct: 128 AHVMAMAVQKLFPNSKVTIGPWIDNGFYYD--FDMEPLTDKDLKRIKKEMDRIIRKNLPL 185

Query: 598 ERLELTKEQLLEMFD--YNPFKVRILNEESSD 687
            R E+++E+  +  +    P+K+ IL     D
Sbjct: 186 VREEVSREEAQKRIEALNEPYKLEILEGIKED 217


>07_01_0057 +
           431084-431105,431149-431297,431380-431526,431622-431752,
           431791-431894,432949-433128,433481-433581,434030-434185,
           434679-434731,434818-434875,435162-435282,436010-436215
          Length = 475

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = -2

Query: 312 SGYYRCVSQTLTDSF---GNIIRCGFPSLSFYSLPIR*CDHN 196
           S  Y C S  L+  F   GN++ CG  + S + L +R   HN
Sbjct: 261 SWMYHCKSDILSQQFMQSGNVVLCGLRNGSIFPLDVRQKQHN 302


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,348,281
Number of Sequences: 37544
Number of extensions: 357432
Number of successful extensions: 957
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)