Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0550
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)         137   7e-33
SB_45669| Best HMM Match : RVT_1 (HMM E-Value=0.14)                    31   0.68 
SB_9929| Best HMM Match : MTS (HMM E-Value=3.5)                        29   2.7  
SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14)                 29   3.6  

>SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)
          Length = 734

 Score =  137 bits (332), Expect = 7e-33
 Identities = 60/81 (74%), Positives = 69/81 (85%)
 Frame = +1

Query: 397 QAVFWHSSAHMLGEAMERVYGGCLCYGPPIEEGFYYDMYYPEKGISSTDFNVLEGLIKKI 576
           +AVFWHSSAH+LGEAMER YGGCLCYGPPIEEG+YYDM+   + +SS DF+ L+ L KKI
Sbjct: 290 RAVFWHSSAHVLGEAMERHYGGCLCYGPPIEEGYYYDMHLEGRQVSSNDFSSLDNLTKKI 349

Query: 577 AKEKQPFERLELTKEQLLEMF 639
            KEKQPFERLE+ KE LLEMF
Sbjct: 350 TKEKQPFERLEMKKEDLLEMF 370



 Score = 37.5 bits (83), Expect = 0.010
 Identities = 14/33 (42%), Positives = 25/33 (75%)
 Frame = +1

Query: 85  AVSEMNPWPEYIQKRITLWDKYKAQYTEQIASK 183
           ++S+++P P YIQ RI ++D+ KA+Y  +IA +
Sbjct: 258 SLSQLDPPPSYIQSRIEMFDRLKAEYDAEIAGR 290


>SB_45669| Best HMM Match : RVT_1 (HMM E-Value=0.14)
          Length = 682

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
 Frame = +1

Query: 382 DNTDAQAVFWHSSAHMLGEAMERVYGGCLCYGPPIEEGFYYDMYY-------PEKGISST 540
           D T ++   +  S H +    ER   GC+C G   +  F Y + Y        E GI +T
Sbjct: 60  DVTLSRYATYGPSIHCVTFFNERCNNGCICIGED-QANFIYTIEYASGYFSGDEDGI-TT 117

Query: 541 DFNVLEGLIKKIAKEKQPFERLELTKEQLLEMFD-YNPFKVRIL 669
           +    E   ++ + +K   +++EL +E L+EM +   P ++R+L
Sbjct: 118 EKTACEDRNQQESWKKPREKKIELQRENLVEMGENEQPHEIRVL 161


>SB_9929| Best HMM Match : MTS (HMM E-Value=3.5)
          Length = 573

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 169 QIASKPDISVVVTLPDGKTVEAKAWKTTPYDVAKGISQ 282
           Q  + P I  V+   DG+T + KA KT+P D A+ + Q
Sbjct: 421 QTIACPAIPQVIPFSDGETRKRKARKTSPLDDAEALLQ 458


>SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14)
          Length = 856

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 532 SSTDFNVLEGLIKKIAKEKQPFERLELTKEQL 627
           S  D N  +     + K+ +PFE+ ELTK+QL
Sbjct: 669 SRNDTNSRQNRRSMLGKKNRPFEKSELTKDQL 700


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,266,790
Number of Sequences: 59808
Number of extensions: 419139
Number of successful extensions: 1098
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)