Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0550
         (700 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    26   0.99 
AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    24   5.3  
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    24   5.3  

>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 26.2 bits (55), Expect = 0.99
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -3

Query: 155 ALYLS-HNVIRFCIYSGHGFISETA 84
           AL LS HNV+R+ I  GH   S +A
Sbjct: 187 ALTLSDHNVVRYAIIQGHRLTSSSA 211


>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 412 HSSAHMLGEAMERVYGGCLCYGPPIEEGFYYDMY 513
           H +   + EA +R+YG  +  G    E  YY  Y
Sbjct: 409 HLNNEHVFEAFDRIYGNKINIGNTYAEEHYYRRY 442


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 412 HSSAHMLGEAMERVYGGCLCYGPPIEEGFYYDMY 513
           H +   + EA +R+YG  +  G    E  YY  Y
Sbjct: 409 HLNNEHVFEAFDRIYGNKINIGNTYAEEHYYRRY 442


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 691,374
Number of Sequences: 2352
Number of extensions: 14429
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71086350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)