Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0550
         (700 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001848-1|AAN71609.1|  711|Drosophila melanogaster RH56418p pro...   280   1e-75
AY119534-1|AAM50188.1|  747|Drosophila melanogaster GH20022p pro...   280   1e-75
AE014134-2163|AAN10805.1|  690|Drosophila melanogaster CG5353-PC...   280   1e-75
AE014134-2162|AAF53167.1|  690|Drosophila melanogaster CG5353-PB...   280   1e-75
AE014134-2161|AAF53166.2|  747|Drosophila melanogaster CG5353-PA...   280   1e-75
AY071425-1|AAL49047.1|  310|Drosophila melanogaster RE50565p pro...    58   9e-09
AE014296-2451|AAF49686.2|  333|Drosophila melanogaster CG17166-P...    58   9e-09
AY047527-1|AAK77259.1| 1013|Drosophila melanogaster GH03311p pro...    34   0.21 
AE013599-3888|AAM68317.1| 1013|Drosophila melanogaster CG4589-PC...    34   0.21 
AE013599-3887|AAF47217.1| 1013|Drosophila melanogaster CG4589-PB...    34   0.21 
AE013599-3886|AAM68316.1| 1013|Drosophila melanogaster CG4589-PA...    34   0.21 
BT001432-1|AAN71187.1|  367|Drosophila melanogaster GH19412p pro...    31   1.1  
AE014296-2124|AAF49935.1|  367|Drosophila melanogaster CG4300-PA...    31   1.1  

>BT001848-1|AAN71609.1|  711|Drosophila melanogaster RH56418p
           protein.
          Length = 711

 Score =  280 bits (686), Expect = 1e-75
 Identities = 122/195 (62%), Positives = 160/195 (82%)
 Frame = +1

Query: 94  EMNPWPEYIQKRITLWDKYKAQYTEQIASKPDISVVVTLPDGKTVEAKAWKTTPYDVAKG 273
           E++P P+YI++R   W+K KA+Y  ++A+K    + VTLPDGK V+A +W+TTPY+VA+G
Sbjct: 39  ELSPLPKYIEERNVFWEKCKAEYEAELAAKKREPIKVTLPDGKQVDATSWETTPYEVARG 98

Query: 274 ISQGLADATIIARVNNELWDLDRPL*GDCKLELLRWDNTDAQAVFWHSSAHMLGEAMERV 453
           ISQGLAD T+I++VN E+WDLDR L G+C L+LL++D+ +AQAVFWHSSAH++GEAMER+
Sbjct: 99  ISQGLADNTVISKVNGEVWDLDRVLEGNCTLQLLKFDDPEAQAVFWHSSAHIMGEAMERI 158

Query: 454 YGGCLCYGPPIEEGFYYDMYYPEKGISSTDFNVLEGLIKKIAKEKQPFERLELTKEQLLE 633
           YGG LCYGPPIE GFYYDM+   +GIS+ D+  +EGL+K+I KEKQ FERLE+ K  LLE
Sbjct: 159 YGGHLCYGPPIENGFYYDMHLEGEGISTNDYGAMEGLVKQIVKEKQNFERLEMKKSDLLE 218

Query: 634 MFDYNPFKVRILNEE 678
           MF YN FKVRILNE+
Sbjct: 219 MFKYNEFKVRILNEK 233


>AY119534-1|AAM50188.1|  747|Drosophila melanogaster GH20022p
           protein.
          Length = 747

 Score =  280 bits (686), Expect = 1e-75
 Identities = 122/195 (62%), Positives = 160/195 (82%)
 Frame = +1

Query: 94  EMNPWPEYIQKRITLWDKYKAQYTEQIASKPDISVVVTLPDGKTVEAKAWKTTPYDVAKG 273
           E++P P+YI++R   W+K KA+Y  ++A+K    + VTLPDGK V+A +W+TTPY+VA+G
Sbjct: 75  ELSPLPKYIEERNVFWEKCKAEYEAELAAKKREPIKVTLPDGKQVDATSWETTPYEVARG 134

Query: 274 ISQGLADATIIARVNNELWDLDRPL*GDCKLELLRWDNTDAQAVFWHSSAHMLGEAMERV 453
           ISQGLAD T+I++VN E+WDLDR L G+C L+LL++D+ +AQAVFWHSSAH++GEAMER+
Sbjct: 135 ISQGLADNTVISKVNGEVWDLDRVLEGNCTLQLLKFDDPEAQAVFWHSSAHIMGEAMERI 194

Query: 454 YGGCLCYGPPIEEGFYYDMYYPEKGISSTDFNVLEGLIKKIAKEKQPFERLELTKEQLLE 633
           YGG LCYGPPIE GFYYDM+   +GIS+ D+  +EGL+K+I KEKQ FERLE+ K  LLE
Sbjct: 195 YGGHLCYGPPIENGFYYDMHLEGEGISTNDYGAMEGLVKQIVKEKQNFERLEMKKSDLLE 254

Query: 634 MFDYNPFKVRILNEE 678
           MF YN FKVRILNE+
Sbjct: 255 MFKYNEFKVRILNEK 269


>AE014134-2163|AAN10805.1|  690|Drosophila melanogaster CG5353-PC,
           isoform C protein.
          Length = 690

 Score =  280 bits (686), Expect = 1e-75
 Identities = 122/195 (62%), Positives = 160/195 (82%)
 Frame = +1

Query: 94  EMNPWPEYIQKRITLWDKYKAQYTEQIASKPDISVVVTLPDGKTVEAKAWKTTPYDVAKG 273
           E++P P+YI++R   W+K KA+Y  ++A+K    + VTLPDGK V+A +W+TTPY+VA+G
Sbjct: 18  ELSPLPKYIEERNVFWEKCKAEYEAELAAKKREPIKVTLPDGKQVDATSWETTPYEVARG 77

Query: 274 ISQGLADATIIARVNNELWDLDRPL*GDCKLELLRWDNTDAQAVFWHSSAHMLGEAMERV 453
           ISQGLAD T+I++VN E+WDLDR L G+C L+LL++D+ +AQAVFWHSSAH++GEAMER+
Sbjct: 78  ISQGLADNTVISKVNGEVWDLDRVLEGNCTLQLLKFDDPEAQAVFWHSSAHIMGEAMERI 137

Query: 454 YGGCLCYGPPIEEGFYYDMYYPEKGISSTDFNVLEGLIKKIAKEKQPFERLELTKEQLLE 633
           YGG LCYGPPIE GFYYDM+   +GIS+ D+  +EGL+K+I KEKQ FERLE+ K  LLE
Sbjct: 138 YGGHLCYGPPIENGFYYDMHLEGEGISTNDYGAMEGLVKQIVKEKQNFERLEMKKSDLLE 197

Query: 634 MFDYNPFKVRILNEE 678
           MF YN FKVRILNE+
Sbjct: 198 MFKYNEFKVRILNEK 212


>AE014134-2162|AAF53167.1|  690|Drosophila melanogaster CG5353-PB,
           isoform B protein.
          Length = 690

 Score =  280 bits (686), Expect = 1e-75
 Identities = 122/195 (62%), Positives = 160/195 (82%)
 Frame = +1

Query: 94  EMNPWPEYIQKRITLWDKYKAQYTEQIASKPDISVVVTLPDGKTVEAKAWKTTPYDVAKG 273
           E++P P+YI++R   W+K KA+Y  ++A+K    + VTLPDGK V+A +W+TTPY+VA+G
Sbjct: 18  ELSPLPKYIEERNVFWEKCKAEYEAELAAKKREPIKVTLPDGKQVDATSWETTPYEVARG 77

Query: 274 ISQGLADATIIARVNNELWDLDRPL*GDCKLELLRWDNTDAQAVFWHSSAHMLGEAMERV 453
           ISQGLAD T+I++VN E+WDLDR L G+C L+LL++D+ +AQAVFWHSSAH++GEAMER+
Sbjct: 78  ISQGLADNTVISKVNGEVWDLDRVLEGNCTLQLLKFDDPEAQAVFWHSSAHIMGEAMERI 137

Query: 454 YGGCLCYGPPIEEGFYYDMYYPEKGISSTDFNVLEGLIKKIAKEKQPFERLELTKEQLLE 633
           YGG LCYGPPIE GFYYDM+   +GIS+ D+  +EGL+K+I KEKQ FERLE+ K  LLE
Sbjct: 138 YGGHLCYGPPIENGFYYDMHLEGEGISTNDYGAMEGLVKQIVKEKQNFERLEMKKSDLLE 197

Query: 634 MFDYNPFKVRILNEE 678
           MF YN FKVRILNE+
Sbjct: 198 MFKYNEFKVRILNEK 212


>AE014134-2161|AAF53166.2|  747|Drosophila melanogaster CG5353-PA,
           isoform A protein.
          Length = 747

 Score =  280 bits (686), Expect = 1e-75
 Identities = 122/195 (62%), Positives = 160/195 (82%)
 Frame = +1

Query: 94  EMNPWPEYIQKRITLWDKYKAQYTEQIASKPDISVVVTLPDGKTVEAKAWKTTPYDVAKG 273
           E++P P+YI++R   W+K KA+Y  ++A+K    + VTLPDGK V+A +W+TTPY+VA+G
Sbjct: 75  ELSPLPKYIEERNVFWEKCKAEYEAELAAKKREPIKVTLPDGKQVDATSWETTPYEVARG 134

Query: 274 ISQGLADATIIARVNNELWDLDRPL*GDCKLELLRWDNTDAQAVFWHSSAHMLGEAMERV 453
           ISQGLAD T+I++VN E+WDLDR L G+C L+LL++D+ +AQAVFWHSSAH++GEAMER+
Sbjct: 135 ISQGLADNTVISKVNGEVWDLDRVLEGNCTLQLLKFDDPEAQAVFWHSSAHIMGEAMERI 194

Query: 454 YGGCLCYGPPIEEGFYYDMYYPEKGISSTDFNVLEGLIKKIAKEKQPFERLELTKEQLLE 633
           YGG LCYGPPIE GFYYDM+   +GIS+ D+  +EGL+K+I KEKQ FERLE+ K  LLE
Sbjct: 195 YGGHLCYGPPIENGFYYDMHLEGEGISTNDYGAMEGLVKQIVKEKQNFERLEMKKSDLLE 254

Query: 634 MFDYNPFKVRILNEE 678
           MF YN FKVRILNE+
Sbjct: 255 MFKYNEFKVRILNEK 269


>AY071425-1|AAL49047.1|  310|Drosophila melanogaster RE50565p
           protein.
          Length = 310

 Score = 58.4 bits (135), Expect = 9e-09
 Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 14/194 (7%)
 Frame = +1

Query: 118 IQKRITLWDKYKAQYTEQIASKPDISV-VVTLPDGKTVEAKAWKTTPYDVAKGISQGLAD 294
           + KR  L+++ + +  + +     I V  + LP+  T+      +TP++ A+ +S+G   
Sbjct: 34  LAKRNDLFNQEQRRQRDAVGRIDKIEVRYLGLPEDVTLVMNGNISTPFNCAQHLSEGHCK 93

Query: 295 ATIIARVNNEL-WDLDRPL*GDCKLELLRWDNTDAQAV---FWHSSAHMLGEAMERVY-- 456
            + +A ++  + WD+ RPL   C L+LL +  ++   V   FW + + MLG A+ R +  
Sbjct: 94  RSALALIDGSVPWDMHRPLQESCTLQLLNFHVSEPHVVNKAFWRTCSFMLGAALNRAFKP 153

Query: 457 -GGCLCY---GPPIEEG-FYYDMYYPEKG--ISSTDFNVLEGLIKKIAKEKQPFERLELT 615
                 +   GP I+ G F +D+    +       +   L   + K+A +    ERL++ 
Sbjct: 154 EANLQLHSFPGPNIKSGSFVHDIVLQTQNWEPGKEEMRALSAEMVKLAAQDLRIERLDVQ 213

Query: 616 KEQLLEMFDYNPFK 657
           ++   EMF  + +K
Sbjct: 214 QDLAQEMFKDSKYK 227


>AE014296-2451|AAF49686.2|  333|Drosophila melanogaster CG17166-PA
           protein.
          Length = 333

 Score = 58.4 bits (135), Expect = 9e-09
 Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 14/194 (7%)
 Frame = +1

Query: 118 IQKRITLWDKYKAQYTEQIASKPDISV-VVTLPDGKTVEAKAWKTTPYDVAKGISQGLAD 294
           + KR  L+++ + +  + +     I V  + LP+  T+      +TP++ A+ +S+G   
Sbjct: 34  LAKRNDLFNQEQRRQRDAVGRIDKIEVRYLGLPEDVTLVMNGNISTPFNCAQHLSEGHCK 93

Query: 295 ATIIARVNNEL-WDLDRPL*GDCKLELLRWDNTDAQAV---FWHSSAHMLGEAMERVY-- 456
            + +A ++  + WD+ RPL   C L+LL +  ++   V   FW + + MLG A+ R +  
Sbjct: 94  RSALALIDGSVPWDMHRPLQESCTLQLLNFHVSEPHVVNKAFWRTCSFMLGAALNRAFKP 153

Query: 457 -GGCLCY---GPPIEEG-FYYDMYYPEKG--ISSTDFNVLEGLIKKIAKEKQPFERLELT 615
                 +   GP I+ G F +D+    +       +   L   + K+A +    ERL++ 
Sbjct: 154 EANLQLHSFPGPNIKSGSFVHDIVLQTQNWEPGKEEMRALSAEMVKLAAQDLRIERLDVQ 213

Query: 616 KEQLLEMFDYNPFK 657
           ++   EMF  + +K
Sbjct: 214 QDLAQEMFKDSKYK 227


>AY047527-1|AAK77259.1| 1013|Drosophila melanogaster GH03311p
           protein.
          Length = 1013

 Score = 33.9 bits (74), Expect = 0.21
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +1

Query: 520 EKGISSTDFNVLEGLIKKIAKEKQPFERLELTKEQLLEMFDY 645
           +KGISSTD  +L   +K ++ +KQ     E  KE   E+ DY
Sbjct: 554 DKGISSTDVQLLSEALKTLSSDKQLVVEKETIKELKEELADY 595


>AE013599-3888|AAM68317.1| 1013|Drosophila melanogaster CG4589-PC,
           isoform C protein.
          Length = 1013

 Score = 33.9 bits (74), Expect = 0.21
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +1

Query: 520 EKGISSTDFNVLEGLIKKIAKEKQPFERLELTKEQLLEMFDY 645
           +KGISSTD  +L   +K ++ +KQ     E  KE   E+ DY
Sbjct: 554 DKGISSTDVQLLSEALKTLSSDKQLVVEKETIKELKEELADY 595


>AE013599-3887|AAF47217.1| 1013|Drosophila melanogaster CG4589-PB,
           isoform B protein.
          Length = 1013

 Score = 33.9 bits (74), Expect = 0.21
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +1

Query: 520 EKGISSTDFNVLEGLIKKIAKEKQPFERLELTKEQLLEMFDY 645
           +KGISSTD  +L   +K ++ +KQ     E  KE   E+ DY
Sbjct: 554 DKGISSTDVQLLSEALKTLSSDKQLVVEKETIKELKEELADY 595


>AE013599-3886|AAM68316.1| 1013|Drosophila melanogaster CG4589-PA,
           isoform A protein.
          Length = 1013

 Score = 33.9 bits (74), Expect = 0.21
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +1

Query: 520 EKGISSTDFNVLEGLIKKIAKEKQPFERLELTKEQLLEMFDY 645
           +KGISSTD  +L   +K ++ +KQ     E  KE   E+ DY
Sbjct: 554 DKGISSTDVQLLSEALKTLSSDKQLVVEKETIKELKEELADY 595


>BT001432-1|AAN71187.1|  367|Drosophila melanogaster GH19412p
           protein.
          Length = 367

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +1

Query: 472 YGPPIEEGFYYDMYYPEKGISSTDFNVLEGLIKKIAKE-KQPFERLELTKEQLL 630
           Y PPI+ G Y D+Y     ++S+D  ++E  I K+  E + PF+++++   + L
Sbjct: 115 YLPPIKRGGYIDIY-----MTSSDERIIEYDIDKVVFEARSPFQKIQIMHSKTL 163


>AE014296-2124|AAF49935.1|  367|Drosophila melanogaster CG4300-PA,
           isoform A protein.
          Length = 367

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +1

Query: 472 YGPPIEEGFYYDMYYPEKGISSTDFNVLEGLIKKIAKE-KQPFERLELTKEQLL 630
           Y PPI+ G Y D+Y     ++S+D  ++E  I K+  E + PF+++++   + L
Sbjct: 115 YLPPIKRGGYIDIY-----MTSSDERIIEYDIDKVVFEARSPFQKIQIMHSKTL 163


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,139,010
Number of Sequences: 53049
Number of extensions: 612529
Number of successful extensions: 1805
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1799
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)