Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0550
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69902-6|CAD89723.1|  684|Caenorhabditis elegans Hypothetical pr...   264   6e-71
Z69902-5|CAA93762.1|  725|Caenorhabditis elegans Hypothetical pr...   264   6e-71
AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans hom...    30   1.8  
AC025723-7|AAN84833.1|  619|Caenorhabditis elegans C.elegans hom...    30   1.8  
AC025723-6|AAN84834.1|  621|Caenorhabditis elegans C.elegans hom...    30   1.8  
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ...    28   7.4  

>Z69902-6|CAD89723.1|  684|Caenorhabditis elegans Hypothetical
           protein C47D12.6b protein.
          Length = 684

 Score =  264 bits (646), Expect = 6e-71
 Identities = 115/200 (57%), Positives = 154/200 (77%)
 Frame = +1

Query: 79  SNAVSEMNPWPEYIQKRITLWDKYKAQYTEQIASKPDISVVVTLPDGKTVEAKAWKTTPY 258
           S A ++M PWP +I++RI LWDK KA+Y  +IA+K    + +TLPDGK  E K W+TTP+
Sbjct: 2   SKAPTDMAPWPAFIEERIKLWDKLKAEYDAEIAAKESEPIQITLPDGKIHEGKTWRTTPF 61

Query: 259 DVAKGISQGLADATIIARVNNELWDLDRPL*GDCKLELLRWDNTDAQAVFWHSSAHMLGE 438
           ++A+ IS+GLA+A +IA+VN  +WDLDRP  G+ KLELL++D+ +A+ VFWHSSAH+LGE
Sbjct: 62  EIAERISKGLAEAAVIAKVNGAVWDLDRPFEGNAKLELLKFDDDEAKQVFWHSSAHVLGE 121

Query: 439 AMERVYGGCLCYGPPIEEGFYYDMYYPEKGISSTDFNVLEGLIKKIAKEKQPFERLELTK 618
           AMER  GG LCYGPPI+EGFYYDM++  + I   DF  ++ ++K   K+KQ FERLE+TK
Sbjct: 122 AMERYCGGHLCYGPPIQEGFYYDMWHENRTICPDDFPKIDQIVKAAVKDKQKFERLEMTK 181

Query: 619 EQLLEMFDYNPFKVRILNEE 678
           E LLEMF YN FKVRI+ E+
Sbjct: 182 EDLLEMFKYNEFKVRIITEK 201


>Z69902-5|CAA93762.1|  725|Caenorhabditis elegans Hypothetical
           protein C47D12.6a protein.
          Length = 725

 Score =  264 bits (646), Expect = 6e-71
 Identities = 115/200 (57%), Positives = 154/200 (77%)
 Frame = +1

Query: 79  SNAVSEMNPWPEYIQKRITLWDKYKAQYTEQIASKPDISVVVTLPDGKTVEAKAWKTTPY 258
           S A ++M PWP +I++RI LWDK KA+Y  +IA+K    + +TLPDGK  E K W+TTP+
Sbjct: 43  SKAPTDMAPWPAFIEERIKLWDKLKAEYDAEIAAKESEPIQITLPDGKIHEGKTWRTTPF 102

Query: 259 DVAKGISQGLADATIIARVNNELWDLDRPL*GDCKLELLRWDNTDAQAVFWHSSAHMLGE 438
           ++A+ IS+GLA+A +IA+VN  +WDLDRP  G+ KLELL++D+ +A+ VFWHSSAH+LGE
Sbjct: 103 EIAERISKGLAEAAVIAKVNGAVWDLDRPFEGNAKLELLKFDDDEAKQVFWHSSAHVLGE 162

Query: 439 AMERVYGGCLCYGPPIEEGFYYDMYYPEKGISSTDFNVLEGLIKKIAKEKQPFERLELTK 618
           AMER  GG LCYGPPI+EGFYYDM++  + I   DF  ++ ++K   K+KQ FERLE+TK
Sbjct: 163 AMERYCGGHLCYGPPIQEGFYYDMWHENRTICPDDFPKIDQIVKAAVKDKQKFERLEMTK 222

Query: 619 EQLLEMFDYNPFKVRILNEE 678
           E LLEMF YN FKVRI+ E+
Sbjct: 223 EDLLEMFKYNEFKVRIITEK 242


>AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans
           homeobox protein 44,isoform a protein.
          Length = 1273

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +1

Query: 199 VVTLPDGKTV--EAKAWKTTPYDVAKGISQGLADATIIARVNNELWDL 336
           +V+LPD K++   A+AWK       K + +       + +VNNEL DL
Sbjct: 92  IVSLPDPKSLLKGAEAWKNDAEKTQKAVEEREELKRQLIKVNNELEDL 139


>AC025723-7|AAN84833.1|  619|Caenorhabditis elegans C.elegans
           homeobox protein 44,isoform b protein.
          Length = 619

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +1

Query: 199 VVTLPDGKTV--EAKAWKTTPYDVAKGISQGLADATIIARVNNELWDL 336
           +V+LPD K++   A+AWK       K + +       + +VNNEL DL
Sbjct: 92  IVSLPDPKSLLKGAEAWKNDAEKTQKAVEEREELKRQLIKVNNELEDL 139


>AC025723-6|AAN84834.1|  621|Caenorhabditis elegans C.elegans
           homeobox protein 44,isoform c protein.
          Length = 621

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +1

Query: 199 VVTLPDGKTV--EAKAWKTTPYDVAKGISQGLADATIIARVNNELWDL 336
           +V+LPD K++   A+AWK       K + +       + +VNNEL DL
Sbjct: 92  IVSLPDPKSLLKGAEAWKNDAEKTQKAVEEREELKRQLIKVNNELEDL 139


>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
           protein Y11D7A.14 protein.
          Length = 1464

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -3

Query: 656 LNGL*SNISNNCSFVSSKRSKGCFSFAIFFIR 561
           L  L SN+SN+ SF  SK+++ C +   F+++
Sbjct: 537 LEKLCSNLSNDSSFKKSKQTQKCSTIRHFYVQ 568


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,137,796
Number of Sequences: 27780
Number of extensions: 318170
Number of successful extensions: 908
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)