Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0549
         (709 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    27   0.20 
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    23   2.4  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   4.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   4.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   4.3  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    22   4.3  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   5.6  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   9.8  

>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 229 YQHQTLRDHFQ*DDGKRTKRTHQETKTFRP 318
           YQHQ L   +  DDGK  +RT  E    RP
Sbjct: 227 YQHQPLLFTYT-DDGKNQQRTGTELTKMRP 255


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 672 RTAASEKP*PGKLGAIISRAK 610
           R  +S+K  PGK   +ISRAK
Sbjct: 239 RPRSSQKSAPGKRTPLISRAK 259


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 524 LLLLHGWPGSVREFYEAIPHLTAVSKDRNFALEIIAPSLPG 646
           L++ +   GSV   ++   + +A  +D N  +  +AP LPG
Sbjct: 72  LVIFYCQEGSVDFLFD---NFSAAFQDHNIEITEVAPVLPG 109


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 524 LLLLHGWPGSVREFYEAIPHLTAVSKDRNFALEIIAPSLPG 646
           L++ +   GSV   ++   + +A  +D N  +  +AP LPG
Sbjct: 305 LVIFYCQEGSVDFLFD---NFSAAFQDHNIEITEVAPVLPG 342


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 524 LLLLHGWPGSVREFYEAIPHLTAVSKDRNFALEIIAPSLPG 646
           L++ +   GSV   ++   + +A  +D N  +  +AP LPG
Sbjct: 305 LVIFYCQEGSVDFLFD---NFSAAFQDHNIEITEVAPVLPG 342


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 392 EEYPFAERQKFLNQYPHFKTNIQG 463
           E+   AER++ L  YP +K ++ G
Sbjct: 53  EQLFLAERERGLKYYPIYKLDVCG 76


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/33 (24%), Positives = 14/33 (42%)
 Frame = -2

Query: 432 WLRNFCLSANGYSSAQYLSQLSNCFELNPYLKP 334
           W +  CL      +   ++  +N    +PYL P
Sbjct: 84  WFKIHCLLQEQQQAGANMAAAANLLRPHPYLSP 116


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 366 WTVGSNIGQKNTHSLKG 416
           W V  +  QKNTH  KG
Sbjct: 311 WKVVWDDTQKNTHMYKG 327


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,161
Number of Sequences: 336
Number of extensions: 3793
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)