Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0549
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    30   0.37 
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po...    29   0.65 
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    29   0.86 
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    27   2.0  
SPAC637.03 |||conserved fungal protein|Schizosaccharomyces pombe...    26   4.6  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    26   6.1  

>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 60  CVLISASRCHVFCLSSCRC 116
           CVL+   RCH+ CLS  +C
Sbjct: 496 CVLLGEIRCHIGCLSCTKC 514


>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
 Frame = +2

Query: 440 HFKTNIQGLNIHFMRITPKVPKGVEIVPLLLLHGWPGSVREFYEAIPHLTAVSKDR-NFA 616
           H+KTN+ G    +    P V KG E   ++      GS+  F+         SK   NF 
Sbjct: 110 HYKTNVLGPIHVYQAFYPLVKKG-ESKIIVFTSSLVGSMGAFFPFNQSGYGQSKAALNFT 168

Query: 617 LEIIAPSLPGYGFSDAAVRPGLAAAEVA 700
           ++ I+  L   GF   ++ PG+   + A
Sbjct: 169 MKEISFELQDEGFIVISIHPGMVRTDSA 196


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 118 SAGVHTIVPPRSEESTADASARPGGVVG 201
           SA   T++PPR+E +   AS +P G  G
Sbjct: 118 SANSSTVLPPRTENALHAASPKPSGSTG 145


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 368 DSWLKYWAEEYPFAERQKFLNQY 436
           ++W  YW   YPF +  K   +Y
Sbjct: 39  ENWKSYWKSHYPFVKNDKGKKKY 61


>SPAC637.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 269

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 622 FQSKVPVFADSCEMRNGFVELPDRARPS 539
           F S   ++  S  +RNGFVE+     PS
Sbjct: 118 FSSSFTMYGQSLRLRNGFVEMISMKLPS 145


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 472 NIQTLDISLEMRILVKELLPF-SEWVFFCPIFEPTVQ 365
           N+QTLD+SL    L+K+   + +++  +    EPT+Q
Sbjct: 98  NLQTLDLSLAEFSLIKDAQNYLNKYASYFQAHEPTLQ 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,171
Number of Sequences: 5004
Number of extensions: 63142
Number of successful extensions: 191
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)