Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0549
(709 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0253 - 11014334-11014592,11015061-11015296,11015370-11015870 32 0.39
09_04_0447 + 17688248-17688319,17688414-17688515,17688852-176889... 31 1.2
10_08_0516 + 18478743-18478830,18478940-18479319,18479406-184796... 30 1.6
02_03_0134 - 15596379-15597689 29 2.7
02_02_0219 + 7985152-7985575,7985818-7985894,7986067-7986127,798... 29 3.6
04_04_0712 + 27476319-27476569,27477150-27477402,27477535-274779... 29 4.8
03_02_0620 + 9916684-9917336,9919219-9919492,9920502-9920585,992... 29 4.8
07_03_0762 + 21324550-21325414,21325606-21325746,21325993-213261... 28 6.3
04_03_0544 - 16970746-16970814,16971295-16971693 28 6.3
04_03_0132 - 11647230-11647432,11647520-11647982,11648159-116482... 28 6.3
03_06_0542 - 34611864-34612364,34613932-34614132,34614745-34615059 28 6.3
02_02_0529 - 11208973-11211143,11211703-11211772,11211993-112120... 28 6.3
04_03_0448 - 16020773-16021066,16023040-16023291,16023470-160236... 28 8.4
03_06_0149 - 31987183-31987630,31987813-31987874 28 8.4
>05_03_0253 - 11014334-11014592,11015061-11015296,11015370-11015870
Length = 331
Score = 32.3 bits (70), Expect = 0.39
Identities = 25/75 (33%), Positives = 34/75 (45%)
Frame = +2
Query: 440 HFKTNIQGLNIHFMRITPKVPKGVEIVPLLLLHGWPGSVREFYEAIPHLTAVSKDRNFAL 619
H + GL +H + P G P+LLLHG+P + + A H D +
Sbjct: 14 HRTVDANGLRMH---VAEAGPPGAP--PVLLLHGFP----QVWYAWRHQMRALADAGY-- 62
Query: 620 EIIAPSLPGYGFSDA 664
+AP L GYG SDA
Sbjct: 63 RAVAPDLRGYGDSDA 77
>09_04_0447 +
17688248-17688319,17688414-17688515,17688852-17688981,
17689198-17689290,17689363-17689451,17689889-17689969,
17690118-17690207,17690653-17690772,17690877-17690927,
17691125-17691171,17691321-17691378,17691451-17691507
Length = 329
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 548 GSVREFYEAIPHLTAVSKDRNFALEIIAPSLPGYG 652
G VR+ YE+ HL V+ DR A + + S+P G
Sbjct: 23 GKVRDVYESGEHLVLVTTDRQSAFDRVLASIPFKG 57
>10_08_0516 +
18478743-18478830,18478940-18479319,18479406-18479641,
18480280-18480538
Length = 320
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/77 (25%), Positives = 34/77 (44%)
Frame = +2
Query: 428 NQYPHFKTNIQGLNIHFMRITPKVPKGVEIVPLLLLHGWPGSVREFYEAIPHLTAVSKDR 607
+Q H I+GLN+H ++ E+ ++ LHG+P E + + H +
Sbjct: 3 DQIEHLHLPIRGLNLHIAQVGKGEISLYELGTVVFLHGFP----EIWYSWRHQMLAAAAA 58
Query: 608 NFALEIIAPSLPGYGFS 658
+ +AP GYG S
Sbjct: 59 GY--RAVAPDWRGYGLS 73
>02_03_0134 - 15596379-15597689
Length = 436
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 197 TTPPGLAEASAVDSSERGGTMVWTPALTAARR*AEDV 87
TT A + + + GG+ VW PALTA R ++D+
Sbjct: 94 TTTAKPANTTKGKADKSGGSSVWPPALTARNRSSKDM 130
>02_02_0219 +
7985152-7985575,7985818-7985894,7986067-7986127,
7986276-7986519,7986613-7987006,7987292-7987729
Length = 545
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = -3
Query: 233 WYPVSV*VRAVPTTPPGLAEASAVDSSERGGTMVWTPALTAARR*AEDVTS*CTNKYTLT 54
W P + + PTT P A+ S+ T T A + + AE C NK +++
Sbjct: 427 WSPPDLQLTLSPTTAPAAADGGGAKRSKTSTTTTNTTAAISGEQEAEKNMDRCKNKLSIS 486
>04_04_0712 +
27476319-27476569,27477150-27477402,27477535-27477914,
27479738-27479864,27479945-27480110,27480221-27480359,
27481854-27481987,27482087-27482229,27482367-27482565,
27482688-27483010
Length = 704
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 560 EFYEAIPHLTAVSKDRNFALEIIAPSLPGYGFSD 661
EF P +S+D+ ALE+I P PG+ SD
Sbjct: 623 EFNVEFPESGVLSRDQCRALEMILPPKPGHQLSD 656
>03_02_0620 +
9916684-9917336,9919219-9919492,9920502-9920585,
9921295-9921356,9921699-9921762
Length = 378
Score = 28.7 bits (61), Expect = 4.8
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +1
Query: 88 TSSAYRLAAVSAGVHTI--VPPRSEESTADASARPGGVVGTART*TETG--YQHQTLRDH 255
+++ R AA++ HT+ VPP +A+ V TAR TG Y+H T +D+
Sbjct: 109 SAAGQRAAALTRMAHTLRLVPPPLLWVVVEANP---DVAATARLLRTTGLMYRHLTYKDN 165
Query: 256 FQ*DDGKRTKRTHQE 300
F D K H +
Sbjct: 166 FTVADAAAGKERHHQ 180
>07_03_0762 +
21324550-21325414,21325606-21325746,21325993-21326177,
21326200-21326410,21326526-21326769,21326853-21327003,
21327089-21327439
Length = 715
Score = 28.3 bits (60), Expect = 6.3
Identities = 23/74 (31%), Positives = 31/74 (41%)
Frame = -2
Query: 438 GYWLRNFCLSANGYSSAQYLSQLSNCFELNPYLKPTPSNGGAKGLRFLMRSFSSFTIVSL 259
G W NF + S + L QL E P P PS G + R + IV
Sbjct: 249 GVWC-NFRYEVFPFFSGRPLLQLPAFVETPP---PPPSPSATSGEKTKNRIGTVLAIVMP 304
Query: 258 KVISKGLMLVSCFC 217
+ + LM+V+CFC
Sbjct: 305 AIAAILLMVVACFC 318
>04_03_0544 - 16970746-16970814,16971295-16971693
Length = 155
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -3
Query: 227 PVSV*VRAVPTTPPGLAEASAVDSSERGGTMVWTPALTAA 108
P + A P+ PP LAE A S R + T A TAA
Sbjct: 73 PEAAAAAAAPSPPPDLAEGEAASSRGRRRQLQRTTAATAA 112
>04_03_0132 -
11647230-11647432,11647520-11647982,11648159-11648271,
11648956-11649412
Length = 411
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 374 WLKYWAEEYPFAERQKFLNQYPHF 445
W KY+ + +A R FL YPHF
Sbjct: 344 WGKYFLVDSGYASRYGFLPSYPHF 367
>03_06_0542 - 34611864-34612364,34613932-34614132,34614745-34615059
Length = 338
Score = 28.3 bits (60), Expect = 6.3
Identities = 22/75 (29%), Positives = 33/75 (44%)
Frame = +2
Query: 440 HFKTNIQGLNIHFMRITPKVPKGVEIVPLLLLHGWPGSVREFYEAIPHLTAVSKDRNFAL 619
H G++IH + +G + +L LHG+P + + HL R F
Sbjct: 13 HRTVEANGISIH---VAEAGGEGGDGAAVLFLHGFPELWYSWRHQMEHLAG----RGF-- 63
Query: 620 EIIAPSLPGYGFSDA 664
+AP L GYG +DA
Sbjct: 64 RCLAPDLRGYGDTDA 78
>02_02_0529 -
11208973-11211143,11211703-11211772,11211993-11212049,
11212769-11212819,11213112-11213264,11216095-11216255,
11216609-11216642
Length = 898
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +2
Query: 497 VPKGVEIVPLLLLHGWPGSVREFYEAIPHLTAVSKDRNFALEIIAPSLPGY 649
+P+G E+ + + +GWP R Y + P + +++ + A +I P + Y
Sbjct: 460 LPQGFELAGMRMDNGWP-RFRSKYMSTPEIENIARMQQAATQINDPYIDDY 509
>04_03_0448 -
16020773-16021066,16023040-16023291,16023470-16023605,
16023713-16023937,16024467-16024851,16025142-16025421
Length = 523
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 520 YYFNAFRDLWSNPHEVNIQTLDISLEMRILVKELLPFSEW 401
Y F R+ NP + + LD +L R+ +KEL S W
Sbjct: 184 YMFEYGREDGHNPVILELAKLDFNLLQRVHLKELKEISRW 223
>03_06_0149 - 31987183-31987630,31987813-31987874
Length = 169
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 112 AVSAGVHTIVPPRSEESTADASARPGGVVGTA 207
A A + T+ PP +E+ A A G+VG A
Sbjct: 38 AADAHIETVAPPLEKEAVAAVLAAVAGIVGDA 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,213,194
Number of Sequences: 37544
Number of extensions: 437243
Number of successful extensions: 1400
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1399
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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