Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0549
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10)              32   0.52 
SB_4268| Best HMM Match : MtrG (HMM E-Value=1.2)                       30   1.6  
SB_45935| Best HMM Match : Aldolase_II (HMM E-Value=1.1e-27)           28   6.5  
SB_10781| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_7770| Best HMM Match : Aldolase_II (HMM E-Value=2.6e-12)            28   6.5  
SB_40492| Best HMM Match : PROCN (HMM E-Value=0)                       28   8.5  
SB_16378| Best HMM Match : DCX (HMM E-Value=0.7)                       28   8.5  

>SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10)
          Length = 466

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 19/70 (27%), Positives = 29/70 (41%)
 Frame = +3

Query: 72  SASRCHVFCLSSCRC*CWRPYHCTSSF*RVHRRCLS*TWRSGGDRPNLNRNRIPASNPSR 251
           S+  C +   S+  C    P HC+ +  RVH RCL   W S  ++      +        
Sbjct: 103 SSDSCRICRDSTAGCDVISPCHCSGTLGRVHVRCLE-EWLSASNKNECEICKYEYHLQRT 161

Query: 252 SLSVRRW*KN 281
             + R+W KN
Sbjct: 162 PKTFRQWLKN 171


>SB_4268| Best HMM Match : MtrG (HMM E-Value=1.2)
          Length = 542

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +1

Query: 295 QETKTFRPSIRGCWLQIWVQFETVGQLAQILGRRIPI 405
           Q   T  PS +G  L ++++F+T G+  ++ GRR+P+
Sbjct: 321 QHAATASPSTQG--LTVYLRFQTAGRPMELSGRRMPV 355


>SB_45935| Best HMM Match : Aldolase_II (HMM E-Value=1.1e-27)
          Length = 468

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 46  DKVVSVYLLVHQDVTSSAYRLAAVSAGVHTIV 141
           D +   ++L H  V S  Y++ A+SAGV  ++
Sbjct: 235 DTIEEAFMLAHMCVLSCEYQVRAMSAGVDNLI 266


>SB_10781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 457

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
 Frame = +3

Query: 525 FCYSMDGRALSGSSTKPFL---ISQLSAKTGTLLWKLSLQVYLVMAF 656
           F YSMDG+ ++ +S+ P+L   I+ +   T T++     Q+ L +AF
Sbjct: 412 FTYSMDGKCITQASSTPYLGVTIADIYHGTNTVITSAKRQI-LPLAF 457


>SB_7770| Best HMM Match : Aldolase_II (HMM E-Value=2.6e-12)
          Length = 716

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 46  DKVVSVYLLVHQDVTSSAYRLAAVSAGVHTIV 141
           D +   ++L H  V S  Y++ A+SAGV  ++
Sbjct: 14  DTIEEAFMLAHMCVLSCEYQVRAMSAGVDNLI 45


>SB_40492| Best HMM Match : PROCN (HMM E-Value=0)
          Length = 1784

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
 Frame = -2

Query: 432 WLRNFCLSANGYSSAQYLSQLSNCFELNPYLKPTPSNGGAKGLRFLMRSFSS---FTIVS 262
           W R  C S +         +L  C+ LN  LK  P     K  R+L RSF S   F   +
Sbjct: 397 WYREHCPSGHPVKVRVSYQKLLKCYVLNA-LKHRPPKAQKK--RYLFRSFKSTKFFQSTT 453

Query: 261 LKVISKGLML 232
           L  +  GL +
Sbjct: 454 LDWVEAGLQV 463


>SB_16378| Best HMM Match : DCX (HMM E-Value=0.7)
          Length = 754

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +2

Query: 158 SPPPMPQLDLEEWWGPPELKQKQDTSIKPFEITFSETMVKELK 286
           SPP  P+   + W+ P   ++K++ +I   ++      + ELK
Sbjct: 436 SPPESPRGAAKAWYEPTRKEEKKEETIMELKVMSFHLTINELK 478


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,467,306
Number of Sequences: 59808
Number of extensions: 461247
Number of successful extensions: 1200
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)