Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0549
         (709 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.           24   5.4  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    24   5.4  
Y08163-1|CAA69355.1|  192|Anopheles gambiae hypothetical protein...    23   7.1  
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    23   7.1  
AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.           23   7.1  
AF008575-1|AAB87764.1|  525|Anopheles gambiae chitinase protein.       23   9.4  

>AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.
          Length = 753

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 94  SAYRLAAVSAGVHTIVPPRSEESTADASARPGGV 195
           +A   AAV AGV  +  PRS  +T+ ++A   GV
Sbjct: 660 AAQMQAAVVAGVSAVGAPRSMHTTSLSAAAGIGV 693


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 170 MPQLDLEEWWGPPELKQKQDTSIKPFEITFSETMVKELKERIK 298
           M QL L++     ELK+    + +  E+T  E+ ++ L+ R+K
Sbjct: 684 MAQLKLQKEKITEELKEVMKKTRRQGELTTVESQIRGLENRLK 726


>Y08163-1|CAA69355.1|  192|Anopheles gambiae hypothetical protein
           protein.
          Length = 192

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 336 ASNMGSIRNSWTVGSNIGQKNTHSL 410
           AS+ GS  N W   +NIG  NT+ L
Sbjct: 117 ASSTGS--NYWIGATNIGASNTNKL 139


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = +1

Query: 82  DVTSSAYRLAAVSAGVHTIVPPRSEES----TADASARPGGVVG 201
           D T++AY+   ++    T  PP+   S    T +   RPG + G
Sbjct: 51  DATTAAYKAGKIAPNPFTAGPPKPNISIPPPTMNMPPRPGMIPG 94


>AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.
          Length = 1459

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = +3

Query: 54  CQCVLISASRCHVFCLSSCRC 116
           C C    A  C + C ++C C
Sbjct: 780 CHCCEFDACDCEMTCPNNCAC 800


>AF008575-1|AAB87764.1|  525|Anopheles gambiae chitinase protein.
          Length = 525

 Score = 23.0 bits (47), Expect = 9.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 173 PQLDLEEWWGPPELKQ 220
           P LDLEE WG   +K+
Sbjct: 81  PYLDLEENWGRGHIKR 96


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 750,907
Number of Sequences: 2352
Number of extensions: 15181
Number of successful extensions: 81
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 72340815
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)