Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0549
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical pr...   145   3e-35
Z74029-6|CAM84812.1|  457|Caenorhabditis elegans Hypothetical pr...   103   1e-22
AC084154-7|AAO91685.1|  304|Caenorhabditis elegans F-box a prote...    30   1.9  
Z50177-3|CAA90545.2|  765|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical
           protein W01A11.1 protein.
          Length = 452

 Score =  145 bits (351), Expect = 3e-35
 Identities = 75/188 (39%), Positives = 116/188 (61%), Gaps = 7/188 (3%)
 Frame = +2

Query: 167 PMPQLDLEE--WWGPPELKQKQDTSIKPFEITFSETMVKELKERIKKRRPFAPPLEGVG- 337
           P  ++++EE  ++G  + K   +T IKPF++   ++++ +LK R++  R     LE    
Sbjct: 25  PEKEINVEENNYYGSGKAKP-DNTEIKPFKVNVEQSVIDDLKHRLQNARISHSVLEDSDD 83

Query: 338 FKYGFNSKQLDSWLKYWAEEYPFAERQKFLNQYPHFKTNIQGLNIHFMRITPKVPKGVE- 514
           F YGFNSKQL     YW  +Y + +++  +NQ+P FKT I+GL +HF+ + P  PK  + 
Sbjct: 84  FYYGFNSKQLLKLRDYWLNKYDWRKQEATINQFPQFKTEIEGLQVHFLHVKP--PKSYKN 141

Query: 515 IVPLLLLHGWPGSVREFYEAIPHLTAVSK---DRNFALEIIAPSLPGYGFSDAAVRPGLA 685
           + P+L+ HGWPG+V EFY+ IP LT   K   D +FA E+IAPS+PGYG+SD   + G +
Sbjct: 142 VKPILVAHGWPGNVFEFYKFIPLLTDPKKHGIDSDFAFEVIAPSIPGYGWSDQPKKTGFS 201

Query: 686 AAEVAVIF 709
               A +F
Sbjct: 202 QLACARVF 209


>Z74029-6|CAM84812.1|  457|Caenorhabditis elegans Hypothetical
           protein C45B11.6 protein.
          Length = 457

 Score =  103 bits (247), Expect = 1e-22
 Identities = 65/189 (34%), Positives = 98/189 (51%), Gaps = 8/189 (4%)
 Frame = +2

Query: 164 PPMPQLDLEEWWGPPELKQKQDTSIKPFEITFSETMVKELKERIKKRRPFAPPLEGVGFK 343
           PP+ ++D +++W   +  +K D +I  F I   E+ V   KE+++  R F P L    + 
Sbjct: 29  PPL-EIDPDDYWKLDD-PEKDDDTIYSFTIDIKESEVSNFKEKLESER-FLPTLYDTNYD 85

Query: 344 YGFNSKQLDSWLKYWAEEYPFAERQKFLNQYPHFKTNIQGLNIHFMRI-TPKVPKGVEIV 520
              N       LK     + + + Q FLN +  +KT I+GL IHF+R+ TP   K   +V
Sbjct: 86  NYLNE------LKQVLLGFNWKQHQHFLNTFKQYKTEIEGLKIHFLRVSTPPKDKKSRVV 139

Query: 521 PLLLLHGWPGSVREFYEAIPHLTAVSK-------DRNFALEIIAPSLPGYGFSDAAVRPG 679
           PLL+ HG+PGS  +F++ IP LT  S+       +     E+I PSLPG+ FSD   + G
Sbjct: 140 PLLIFHGFPGSFWDFFKIIPILTNPSRHGFDFGVEEAIQFEVIVPSLPGFIFSDKPTKQG 199

Query: 680 LAAAEVAVI 706
             A   A I
Sbjct: 200 FNAIATARI 208


>AC084154-7|AAO91685.1|  304|Caenorhabditis elegans F-box a protein
           protein 74 protein.
          Length = 304

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 320 PLEGVGFKYGFNSKQLDSWLKYWAEEYPFAERQKFLNQYPHFK 448
           P EG G +  F  +Q      ++ E Y F   +  +NQ+ HFK
Sbjct: 175 PTEGDGIEDLFQLEQFQKSRDFYMESYAFDTTKTSINQFFHFK 217


>Z50177-3|CAA90545.2|  765|Caenorhabditis elegans Hypothetical
           protein F46G10.5 protein.
          Length = 765

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 404 FAERQKFLNQYPHFKTNIQGLNIHFMRITPKVPKGVEIVPLL 529
           F + +   N+YP FKT      I F  I  +VP  V ++PL+
Sbjct: 562 FEKCRAVTNKYPEFKTTPFDTEIGFADIILQVPLVVAVIPLV 603


>U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical
           protein K09C4.10 protein.
          Length = 1035

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +2

Query: 326 EGVGFKYGFNSKQLDSWLKYWAEEYPFAERQKFLNQYPHFKTNI 457
           +GV     + ++ ++  +  W+E  P A+  KF N+  H++T +
Sbjct: 303 QGVKALERYETENMNEEVTDWSEPKPLAKFYKFFNKTLHYETTV 346


>Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical protein
            ZK593.5 protein.
          Length = 1326

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +2

Query: 260  SETMVKELKERIKKRRPFAPPLEGVGFKYGFNSKQLDSWLKYWAEEYPF 406
            +E MV+E++    KR  F   L  V      N +    W   W EEYPF
Sbjct: 1255 TEKMVEEMEIFNVKREQFFDKLNSV------NRRLRRVWFDAWGEEYPF 1297


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,578,763
Number of Sequences: 27780
Number of extensions: 353818
Number of successful extensions: 1029
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)