Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0549
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.6  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   5.0  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   5.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.6  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   8.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = +3

Query: 54  CQCVLISASRCHVFCLSSCRC 116
           C C    A  C + C + C+C
Sbjct: 747 CHCCDFDACDCEMTCPAGCKC 767


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 271 HRLTESDLEGFDAGI 227
           +RLT+  L+G+DAG+
Sbjct: 7   YRLTKYLLDGYDAGV 21


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/39 (28%), Positives = 15/39 (38%)
 Frame = +2

Query: 536 HGWPGSVREFYEAIPHLTAVSKDRNFALEIIAPSLPGYG 652
           H WP  +R  Y  + +L       N A   I   +  YG
Sbjct: 211 HMWPSDLRTIYSRVRNLNRTHGFPNDAQPYIFQEVIDYG 249


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 407 AERQKFLNQYPHFKTNIQ 460
           A  ++ LN YP F+ N+Q
Sbjct: 637 ASMKENLNVYPEFQENVQ 654


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 212  LKQKQDTSIKPFEITFSETMVKELKERIKKRRPFAPPLEGV 334
            L +  ++S  P +      +   +K++  KRR   P LEGV
Sbjct: 963  LYKSSESSCNPDQKPTEYLLEDSMKQQYGKRRKEPPWLEGV 1003


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +2

Query: 485 ITPKVPKGVEI---VPLLLLHGWPGSVREFYEAIPHLTAVSKDRNFALEIIAPS 637
           ITP + K ++I     +  LHG PG +   + A+    A     +++L  I P+
Sbjct: 315 ITPLIQKHLKIHDTCGVHNLHGMPGILGGIFGALMAALATEASYDYSLYEIFPA 368


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 543  HPWSNRSGTISTPLG 499
            HP +  SGT+  P+G
Sbjct: 1750 HPGNGHSGTMGPPVG 1764


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 161 PPPMPQLDLEEWWGPPELKQKQDTSIKP 244
           PP + ++D +E  G  E K+ +   +KP
Sbjct: 690 PPQVDEVDDKELSGAEEEKEVEKALLKP 717


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,089
Number of Sequences: 438
Number of extensions: 4403
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)