Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0548
         (578 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       26   0.20 
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    23   2.5  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   3.3  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    21   7.6  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    21   7.6  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 275 CKKGRKGGNCNMKCEDLLNEDLADDVRCAKRVYD 376
           CK+G +G  CN+  +D       ++  C  R+ D
Sbjct: 94  CKEGWEGALCNINTDDCSPNPCRNNGSCVDRIAD 127



 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 275 CKKGRKGGNCNMK 313
           CK G KG  C++K
Sbjct: 132 CKNGWKGKTCSLK 144


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/50 (22%), Positives = 22/50 (44%)
 Frame = -3

Query: 222 WFVIFSVVLLIICSMRHTQVGIKALGKLYLKSSLDSWHLVKTFACPSELW 73
           W ++F  +  +  ++ +    +K LGK Y  +S  +  L        +LW
Sbjct: 157 WNILFGHIFTVCRTLIYIDDNVKGLGKQYNIASSKTLKLSINIISLVQLW 206


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 275 CKKGRKGGNCNMKCED 322
           C KG +G NC +  +D
Sbjct: 210 CPKGFQGQNCELNVDD 225


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +1

Query: 403 FLLLLQAEEPTRHLQMLNASTKDTTIQLIVFSFF 504
           + L  + ++  RHLQ++     +T +Q     FF
Sbjct: 359 YALKNEVDKRVRHLQLVAIRLLNTKLQFTAKDFF 392


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +1

Query: 403 FLLLLQAEEPTRHLQMLNASTKDTTIQLIVFSFF 504
           + L  + ++  RHLQ++     +T +Q     FF
Sbjct: 315 YALKNEVDKRVRHLQLVAIRLLNTKLQFTAKDFF 348


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,960
Number of Sequences: 336
Number of extensions: 2838
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14412858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)