Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0548
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    27   2.0  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    26   3.5  
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual    26   4.6  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   8.0  

>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1131

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 22/75 (29%), Positives = 29/75 (38%)
 Frame = +2

Query: 167  WVCLIEHMISRTTEKITNHNNSYSSYGLFQINNKDWCKKGRKGGNCNMKCEDLLNEDLAD 346
            WV LI    S T +       S    G+ Q+    W KK    GN    C    N  L  
Sbjct: 927  WVHLI--CASWTPDVYVPAEESEPVCGIAQLPPNRWEKKCEVCGNSFGVCVSSPNSGLTS 984

Query: 347  DVRCAKRVYDRIGFK 391
             V CA++    +GF+
Sbjct: 985  HVTCAEKANWYLGFE 999


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 149  RALIPTWVCLIEHMISRTTEKITNHNNSYSSYGLFQ 256
            RA +PT +CL + +       + NH+  + + G  Q
Sbjct: 1295 RASLPTLICLSKKIFENAENVVENHSLDFLNRGTMQ 1330


>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +1

Query: 430 PTRHLQMLNASTKDTTIQLIVFSFFFYIRRTPVSCSV 540
           P+R++Q +N + +   I+L++    ++  R P+ C V
Sbjct: 95  PSRYVQQVNKAMRFFNIRLVITPVPWFQVRKPLDCGV 131


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 11   YKKIWSNHHISVLLFLAVTLVHSSEGH 91
            YKK +S+H  + L+F+  T+ H    H
Sbjct: 2820 YKKFYSSHPNNTLVFVDETITHILRFH 2846


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,294,549
Number of Sequences: 5004
Number of extensions: 44871
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)