Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0548
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0289 + 42540059-42541141                                         28   4.7  
05_03_0312 - 12172565-12172645,12172920-12172982,12173077-121731...    27   8.2  
04_04_1347 + 32803664-32803796,32803891-32804093,32804202-328043...    27   8.2  
04_04_0533 + 26064187-26065581                                         27   8.2  

>01_07_0289 + 42540059-42541141
          Length = 360

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 56  LAVTLVHSSEGHAKVFTRCQLSRELLRYNFPRALIP 163
           L+  ++ S+   A  F  C+L++ LLR + P  L+P
Sbjct: 127 LSAVILGSASSSAVYFGTCELAKSLLRPHLPPFLVP 162


>05_03_0312 -
           12172565-12172645,12172920-12172982,12173077-12173152,
           12174629-12174773,12175121-12175208
          Length = 150

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 188 MISRTTEKITNHNNSYSSYGLFQINNKDWCKKGRKGGN 301
           MI R  +K  NH+ S   +    IN++ W +   K GN
Sbjct: 103 MIDRRKKKDLNHDRSIHQFPKMVINHQRWERMRIKNGN 140


>04_04_1347 +
           32803664-32803796,32803891-32804093,32804202-32804383,
           32804514-32804798,32804901-32804959,32805052-32805088,
           32805186-32805257,32805336-32806005
          Length = 546

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -3

Query: 228 LLWFVIFSVVLLII 187
           +LWF++F +VLLII
Sbjct: 126 MLWFIVFGIVLLII 139


>04_04_0533 + 26064187-26065581
          Length = 464

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +2

Query: 104 TRCQLSRELLRYNF-PRALIPTWVCLIEHMISRTTE 208
           T C  +  +    F P A I  W C++EH I+   E
Sbjct: 366 TNCAAAISMFSKEFNPSAAIDVWHCIVEHQITPADE 401


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,769,811
Number of Sequences: 37544
Number of extensions: 294263
Number of successful extensions: 757
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)