Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0548
         (578 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36331| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_24152| Best HMM Match : PKD (HMM E-Value=4.1e-29)                   28   6.3  
SB_19938| Best HMM Match : TolA (HMM E-Value=0.22)                     28   6.3  
SB_51198| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_33327| Best HMM Match : Tombus_movement (HMM E-Value=3.5)           27   8.4  

>SB_36331| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 596

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 142 LSKSFDPDLGMPHRAYDQQNNREDYEPQQLLL*LRIVPD*QQRLVQERQE 291
           ++ + D  LG     +   + RE    + L+L L I+P  QQR + ER E
Sbjct: 90  MTMTMDDGLGRVVPGWQSSDGREGGYSRYLMLPLEIIPAVQQRALPERHE 139


>SB_24152| Best HMM Match : PKD (HMM E-Value=4.1e-29)
          Length = 1130

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 168 QVGIKALGKLYLKSSLDSWHLVKTF 94
           Q+G +  GK Y  SSLDS H++K F
Sbjct: 433 QIGHRNGGKAYEISSLDSSHIIKGF 457


>SB_19938| Best HMM Match : TolA (HMM E-Value=0.22)
          Length = 2279

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -3

Query: 171  TQVGIKALGKLYLKSSLDSWHLVKTFACPSELWTRVTARNSSTE 40
            +  G+K L    L +S D+  L    AC S  W +VT   S  E
Sbjct: 884  SSTGLKELRPFDLSASWDTQSLESLAACASSQWRQVTLHPSLAE 927


>SB_51198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1627

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 357 AQNGYTIESDSRPGRLLTPTASRRTYQTSPDAERLYQRYHHPIN 488
           +++  TI +D  P +L+   +S R+   S    RL ++ HHPIN
Sbjct: 837 SRDALTISADQLPAQLIGRLSSPRS--PSDVIARLLRQAHHPIN 878


>SB_33327| Best HMM Match : Tombus_movement (HMM E-Value=3.5)
          Length = 527

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 154 FDPDLGMPHRAYDQQNNREDYEPQQLLL*LRIVPD*QQRLVQERQEGR 297
           F   LG     +   + RE    + LLL L I+P  +QR + ER + R
Sbjct: 38  FHDGLGRVVAGWQSSDGREGGYSRYLLLPLEIIPAVKQRALPERHKAR 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,127,503
Number of Sequences: 59808
Number of extensions: 341329
Number of successful extensions: 1064
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)