Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0548
         (578 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z11126-4|CAA77472.2|  180|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U53332-11|AAK31531.1|  668|Caenorhabditis elegans Protein tyrosi...    29   3.2  
AF015882-1|AAC21678.1|  668|Caenorhabditis elegans protein tyros...    29   3.2  
Z78418-4|CAB01698.1|  710|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ...    27   9.6  
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ...    27   9.6  
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ...    27   9.6  
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.      27   9.6  
AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine re...    27   9.6  

>Z11126-4|CAA77472.2|  180|Caenorhabditis elegans Hypothetical
           protein ZK643.6 protein.
          Length = 180

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 278 KKGRKGGNCNMKCEDLLNEDLADDVRCAKRVYDRIGFKAWPSSYSYC 418
           K G  GG    +C DL N+   +  RC+ + Y  +  +  P + + C
Sbjct: 95  KTGGNGGTGTQECTDLANDCSYNQNRCSVKEYSSLMHRLCPKTCNAC 141


>U53332-11|AAK31531.1|  668|Caenorhabditis elegans Protein tyrosine
           phosphatase protein2 protein.
          Length = 668

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -2

Query: 559 IEKKILLPNNLQVCDVYKKKKRTQLIGWWY 470
           ++K + +P +L+ C   ++++RTQL  WW+
Sbjct: 109 LKKPVYVPYHLEACA--EEQRRTQLYRWWH 136


>AF015882-1|AAC21678.1|  668|Caenorhabditis elegans protein tyrosine
           phosphatase protein.
          Length = 668

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -2

Query: 559 IEKKILLPNNLQVCDVYKKKKRTQLIGWWY 470
           ++K + +P +L+ C   ++++RTQL  WW+
Sbjct: 109 LKKPVYVPYHLEACA--EEQRRTQLYRWWH 136


>Z78418-4|CAB01698.1|  710|Caenorhabditis elegans Hypothetical
           protein F25D7.5 protein.
          Length = 710

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 195 LIICSMRHTQVGIKALGKLYLKSSLD 118
           L+ CS     +G+K++GK+YL +  D
Sbjct: 210 LVSCSSTVLLIGVKSVGKIYLSNGED 235


>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4c protein.
          Length = 1045

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +2

Query: 275 CKKGRKGGNCNMKCE-DLLNEDLADDVRCAKR 367
           CK GR G NC+  C  D    + A   +C +R
Sbjct: 448 CKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQR 479


>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4b protein.
          Length = 1070

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +2

Query: 275 CKKGRKGGNCNMKCE-DLLNEDLADDVRCAKR 367
           CK GR G NC+  C  D    + A   +C +R
Sbjct: 448 CKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQR 479


>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4a protein.
          Length = 1111

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +2

Query: 275 CKKGRKGGNCNMKCE-DLLNEDLADDVRCAKR 367
           CK GR G NC+  C  D    + A   +C +R
Sbjct: 448 CKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQR 479


>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
          Length = 1111

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +2

Query: 275 CKKGRKGGNCNMKCE-DLLNEDLADDVRCAKR 367
           CK GR G NC+  C  D    + A   +C +R
Sbjct: 448 CKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQR 479


>AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 65 protein.
          Length = 325

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 376 IVYPFCASNVIGQVFVQEIFTFHVAISALPAFLAPIFVV 260
           +V+ F    V G  F+   +T    + ALP FL PIF +
Sbjct: 253 VVFLFILIQVTGHQFLISQYTI-TCLGALPCFLDPIFQI 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,713,510
Number of Sequences: 27780
Number of extensions: 255988
Number of successful extensions: 731
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)