Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0548
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   1.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   1.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   1.6  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          23   1.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.9  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   3.8  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   6.7  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   8.8  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.8  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 170 VCLIEHMISRTTEKITNHNNSY 235
           VC + H + RT   + NH + Y
Sbjct: 403 VCALCHKVFRTLNSLNNHKSIY 424


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 517 DVYKKKKRTQLIGWWY 470
           D+YK K   Q   WWY
Sbjct: 70  DMYKDKNVVQKFLWWY 85


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 517 DVYKKKKRTQLIGWWY 470
           D+YK K   Q   WWY
Sbjct: 70  DMYKDKNVVQKFLWWY 85


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 176 LIEH--MISRTTEKITNHNNSYSSYGLFQINNKDWCKKGRKGGNCNMKCEDLLNED 337
           + EH  +++   EK  N   +   Y +   + +   +  ++  +C+ + EDL +ED
Sbjct: 186 ITEHRTVLAVNIEKSENETKTCKKYAISSNSLRSRSRSFQRTSSCHSRYEDLRHED 241


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +2

Query: 125 ELLRYNFPRALIPTWVC 175
           E L++++PR   P+++C
Sbjct: 105 EYLKFSYPRMRAPSFIC 121


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = +2

Query: 176 LIEHMISRTTEKITNHNNSYSSYGLFQINNKDWCKKGR 289
           ++ H++ +TT  +      Y  YG   +N      KG+
Sbjct: 305 MLSHILQKTTLNMLTQVECYKYYGNIMVNAMCAYAKGK 342


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 218 NHNNSYSSYGLFQINNKDWCKK 283
           N+NN+Y++Y  +  N  +  KK
Sbjct: 329 NYNNNYNNYNNYNNNYNNNYKK 350


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 199 SADHMLYEAYPSRDQSS 149
           S D+ LYE +P+R  +S
Sbjct: 357 SYDYSLYEIFPARAPNS 373


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 218 NHNNSYSSYGLFQINN 265
           N+NN+Y++Y     NN
Sbjct: 333 NYNNNYNNYNNNNYNN 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,378
Number of Sequences: 438
Number of extensions: 3218
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)