Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0547
         (702 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    25   0.79 
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    23   2.4  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   7.4  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.4  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   9.7  

>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +1

Query: 10  YHIIMSFDNDELRDEYPDGTVRLRNPNIEL 99
           YHI +  +++E RD++    ++L N  +E+
Sbjct: 172 YHIKIDREDEEARDDFIKLGIKLSNDKLEI 201


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 301 ILHV*SWPGTFYKSRYGH 354
           IL V + P  FY+SRY H
Sbjct: 10  ILAVSAAPAEFYESRYDH 27


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -3

Query: 229 CVCELFHAFRCSAHAHKLDVSKHLNK 152
           C+CEL+ AF    +   LD    +++
Sbjct: 315 CLCELYMAFMDRLYFSNLDKDAFIHR 340


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 652 VRAHCFAGHGVVGVFGIGQCFQLP 581
           V AH   G G +G +G  +   +P
Sbjct: 189 VEAHLRKGRGAIGAYGPEKSASIP 212


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +1

Query: 70  VRLRNPNIELMDQDILYHLALGSGL 144
           +R  NP   L     L+H+ +G  L
Sbjct: 659 LRANNPGFWLFHCHFLFHIVIGMNL 683


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,409
Number of Sequences: 336
Number of extensions: 4081
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)