Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0547
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    29   0.85 
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz...    28   1.5  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    27   2.6  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    27   2.6  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    26   6.0  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    26   6.0  

>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 280 VLQCSSTRQLVP-YLRHDCVCELFHAF 203
           V QC+ST  + P YLR D + E FH F
Sbjct: 676 VSQCASTDGVTPEYLRTDVLPEFFHCF 702


>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 669

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 319 WPGTFYKSRYGHTFCRNP 372
           W   FY+ RY HT  +NP
Sbjct: 584 WQNLFYEKRYSHTHQKNP 601


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 195 PPMHTNLTSPNISTRSWEAAPKGQMVENILVHE 97
           P M+  +T P I T   +  P+ Q VENIL H+
Sbjct: 121 PEMYLKVTKPFIET---QRGPQIQWVENILTHK 150


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 274 QCSSTRQLVPYLRHDCVCELFHAFR 200
           Q  + RQ++  +RH  +C L++AF+
Sbjct: 136 QTKNERQILEEVRHPFICRLYYAFQ 160


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 193 RNTETHGTIRIHNHGGDRAQVALWNYTARHQSFFL 297
           R    H T  +   GGD  +V +WNY +R   F L
Sbjct: 57  RGIAFHPTQPLFVSGGDDYKVNVWNYKSRKLLFSL 91


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
 Frame = -1

Query: 189 MHTNLTS--PNIS-TRSWEAAPKGQMVENILV 103
           MH+N  S  P+ S T S++ +PKGQ+ +NI V
Sbjct: 154 MHSNSPSFPPSQSHTSSYDQSPKGQLRDNISV 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,992,477
Number of Sequences: 5004
Number of extensions: 63876
Number of successful extensions: 160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)