Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0547
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0192 + 15478270-15480257,15480358-15480640,15480727-15481116 31 0.89
09_04_0310 + 16578679-16580936,16581027-16581294 31 1.2
01_05_0212 + 19347142-19347444,19348853-19348907,19349117-193492... 30 2.0
03_02_0001 + 4844009-4844046,4845155-4845410,4845560-4845704,484... 29 2.7
11_01_0165 - 1349319-1349399,1349523-1349609,1349691-1349809,134... 28 6.2
08_01_0511 + 4459685-4459755,4461553-4463653,4463741-4463808,446... 28 6.2
02_05_1318 - 35686493-35686640,35686756-35686826,35686916-356870... 28 6.2
09_03_0097 + 12335425-12336197,12336438-12336618,12337409-123375... 28 8.3
>09_04_0192 + 15478270-15480257,15480358-15480640,15480727-15481116
Length = 886
Score = 31.1 bits (67), Expect = 0.89
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 242 IGHKLPCGTTLQDISHFSYRYSMYKVGPVLSISHGMGIPSV 364
+ H+LP T S F + +S+ L +SHG+G+ V
Sbjct: 52 VAHRLPLNATPDPGSPFGFAFSLSADAHALQLSHGLGLAHV 92
>09_04_0310 + 16578679-16580936,16581027-16581294
Length = 841
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +2
Query: 92 LNSWTKIFSTIWPLGAASHDLVEMFGDVKFVCMGGTPKRMEQFAYTIMAEIGHKL-PCGT 268
+ + KIF+ +W L H L ++ +K C+ +P E I ++ L C
Sbjct: 600 MKRYLKIFNFLWKLKRVDHSLTGIWKTMKPNCIVSSPFYKE--GTNIRSQFVSVLRKCQV 657
Query: 269 TLQDISHFSYRYSMYKVGPVLSIS 340
+++HF + Y + VL +S
Sbjct: 658 LFNEMNHFVTNFQYYIMFEVLEVS 681
>01_05_0212 +
19347142-19347444,19348853-19348907,19349117-19349292,
19350033-19350254,19350359-19350597,19351100-19351625,
19351707-19351980,19352166-19352225,19352362-19353025,
19353747-19353975,19354071-19354337,19354414-19354602,
19354771-19355415
Length = 1282
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = +2
Query: 233 MAEIGHKLPCGTTLQDISHFSYRYS----MYKVGPVLSISHGMGIPSVGILLHEVIKLMY 400
M E K+P G IS Y + +G V + HG+ P GIL+ IK+ Y
Sbjct: 712 MEETTDKVPRGQKKASISRLFYLNKPEAFVLVLGSVTAAMHGLMFPIFGILISSAIKMFY 771
>03_02_0001 +
4844009-4844046,4845155-4845410,4845560-4845704,
4845747-4845931,4847011-4847268,4847395-4847476,
4847562-4847641
Length = 347
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +1
Query: 265 NYTARHQSFFLQILHV*SWPGTFYKSRYGHTFCR--NPASRSHKVDVPRESP*SCVLQNR 438
N R S+ + V + G+ Y++ Y H C+ +PA RS+ V S CVL
Sbjct: 97 NKVVREISYSSSGVTVKTEDGSVYQADYRHGLCQLGSPAERSYTVQATAASSDRCVLHVF 156
Query: 439 NMWW 450
+ W
Sbjct: 157 DQKW 160
>11_01_0165 -
1349319-1349399,1349523-1349609,1349691-1349809,
1349899-1350137,1350240-1350296,1350593-1350679,
1350822-1350955,1350971-1351357
Length = 396
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/50 (26%), Positives = 20/50 (40%)
Frame = +2
Query: 98 SWTKIFSTIWPLGAASHDLVEMFGDVKFVCMGGTPKRMEQFAYTIMAEIG 247
SW L ++ +FG + FV GG P F++ E+G
Sbjct: 111 SWLLTVQFYLGLAGVMGSMILVFGQLAFVFFGGCPLTWTGFSFAAFTELG 160
>08_01_0511 +
4459685-4459755,4461553-4463653,4463741-4463808,
4465156-4465282,4465379-4465429
Length = 805
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 491 AVDGALRNVLELTVLGKIVQRPAKLDRRLVREL 589
A + +L+NV LT+ G V+ P+ LD +++R L
Sbjct: 293 ATNLSLKNVRSLTIFGYFVKTPSLLDFKVLRVL 325
>02_05_1318 -
35686493-35686640,35686756-35686826,35686916-35687008,
35687102-35687383,35687927-35688008,35688380-35688441,
35688657-35688831,35688978-35689120,35689338-35689530,
35689643-35689768,35689839-35690119
Length = 551
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = -3
Query: 445 TCSDSEEHRITDFRVVHQLYDFVKQDSDRRYAHTVTYRKYRANFIHGVSVRKMT 284
TCS + I D + + VK + DRR H RK+R + V K T
Sbjct: 392 TCSRTAVS-ILDIIALRAVATVVKMEDDRRLFHNAALRKHRKEVTERMDVLKST 444
>09_03_0097 +
12335425-12336197,12336438-12336618,12337409-12337572,
12338132-12338393,12338488-12338604
Length = 498
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = -3
Query: 370 DSDRRYAHTVTYRKYR-ANFIHGVSVRKMTDVLQCSSTRQLVPYLRHDCVCELFHAFRCS 194
++++ HT+ + A+ + V V D+++ ++L+ + H+C CEL A
Sbjct: 192 NNEQMVLHTLFHAPLNEAHLVAEVIVDHAADIMESIHGQRLLSCVLHNCCCELHEAIVAK 251
Query: 193 AHAHK 179
H+
Sbjct: 252 ITQHR 256
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,979,008
Number of Sequences: 37544
Number of extensions: 440842
Number of successful extensions: 1080
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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