Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0547
(702 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6519| Best HMM Match : PNP_UDP_1 (HMM E-Value=0.16) 64 1e-10
SB_27959| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_21463| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_35692| Best HMM Match : LicD (HMM E-Value=4.3e-08) 29 4.8
SB_48772| Best HMM Match : rve (HMM E-Value=4.2e-35) 28 6.4
SB_22156| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_15656| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_757| Best HMM Match : RnaseH (HMM E-Value=7.8) 28 6.4
SB_17252| Best HMM Match : Integrase_Zn (HMM E-Value=0.96) 28 6.4
SB_14976| Best HMM Match : rve (HMM E-Value=1.3e-38) 28 6.4
SB_4255| Best HMM Match : rve (HMM E-Value=1.4e-38) 28 6.4
SB_24501| Best HMM Match : RVT_1 (HMM E-Value=4.2e-37) 28 8.4
>SB_6519| Best HMM Match : PNP_UDP_1 (HMM E-Value=0.16)
Length = 238
Score = 63.7 bits (148), Expect = 1e-10
Identities = 30/56 (53%), Positives = 38/56 (67%)
Frame = +2
Query: 530 VLGKIVQRPAKLDRRLVRELKALADPEDPYDTVTGKTMCTYDFYEGQGRLNGAFCD 697
+LGK+ + PA LD +L +L +D T GKTMCT DFYEGQGRL+GAFC+
Sbjct: 87 ILGKVTKFPASLDDKLKEDLMQCSDG---IPTAEGKTMCTNDFYEGQGRLDGAFCE 139
>SB_27959| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 373
Score = 33.9 bits (74), Expect = 0.13
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = +1
Query: 178 VCVHGRNTETHGTIRIHNHGGDRAQVALWNYTARHQSFFLQILHV*SWPGTFYKSRYGHT 357
+C +G +G I + G + WN T H H+ S P T+++ R GH
Sbjct: 284 LCFNGTGEHYNGNISVTEKGFGCQR---WNVTTPH-------FHLMS-PATYHELRGGHN 332
Query: 358 FCRNPASRSHK 390
+CRNP + +
Sbjct: 333 YCRNPGGKKQR 343
>SB_21463| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1042
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 16 IIMSFDNDELRDEYPDGTVRLRNPN 90
I+ DELRDE P GT+R + P+
Sbjct: 872 IVPPLAEDELRDESPSGTLRQKTPD 896
>SB_35692| Best HMM Match : LicD (HMM E-Value=4.3e-08)
Length = 549
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/40 (27%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 284 SHFSYRYSMYKVGPVLSISHGM-GIPSVGILLHEVIKLMY 400
+H ++ ++ VGP++S HG+ +P V + LH + + ++
Sbjct: 478 NHLGLKFCVFFVGPLISREHGLRSMPHVVLALHVLCERLH 517
>SB_48772| Best HMM Match : rve (HMM E-Value=4.2e-35)
Length = 494
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 223 CELFHAFRCSAHAHKLDVSKHLNKIMGGRSQGPNGR 116
CE FH F H L K L ++G +S+ P+ R
Sbjct: 41 CEKFHMFLYGTHFEILTDHKPLISVLGPKSKPPSAR 76
>SB_22156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1551
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 223 CELFHAFRCSAHAHKLDVSKHLNKIMGGRSQGPNGR 116
CE FH F H L K L ++G +S+ P+ R
Sbjct: 1039 CEKFHMFLYGTHFEILTDHKPLISVLGPKSKPPSAR 1074
>SB_15656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1107
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 223 CELFHAFRCSAHAHKLDVSKHLNKIMGGRSQGPNGR 116
CE FH F H L K L ++G +S+ P+ R
Sbjct: 591 CEKFHMFLYGTHFEILTDHKPLISVLGPKSKPPSAR 626
>SB_757| Best HMM Match : RnaseH (HMM E-Value=7.8)
Length = 193
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 223 CELFHAFRCSAHAHKLDVSKHLNKIMGGRSQGPNGR 116
CE FH F H L K L ++G +S+ P+ R
Sbjct: 66 CEKFHMFLYGTHFEILTDHKPLISVLGPKSKPPSAR 101
>SB_17252| Best HMM Match : Integrase_Zn (HMM E-Value=0.96)
Length = 391
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 223 CELFHAFRCSAHAHKLDVSKHLNKIMGGRSQGPNGR 116
CE FH F H L K L ++G +S+ P+ R
Sbjct: 140 CEKFHMFLYGTHFEILTDHKPLISVLGPKSKPPSAR 175
>SB_14976| Best HMM Match : rve (HMM E-Value=1.3e-38)
Length = 1172
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 223 CELFHAFRCSAHAHKLDVSKHLNKIMGGRSQGPNGR 116
CE FH F H L K L ++G +S+ P+ R
Sbjct: 719 CEKFHMFLYGTHFEILTDHKPLISVLGPKSKPPSAR 754
>SB_4255| Best HMM Match : rve (HMM E-Value=1.4e-38)
Length = 899
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 223 CELFHAFRCSAHAHKLDVSKHLNKIMGGRSQGPNGR 116
CE FH F H L K L ++G +S+ P+ R
Sbjct: 355 CEKFHMFLYGTHFEILTDHKPLISVLGPKSKPPSAR 390
>SB_24501| Best HMM Match : RVT_1 (HMM E-Value=4.2e-37)
Length = 565
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 267 VPQGNLCPISAMIVYANCSMRFGVPPMHTNLTS-PNISTR-SWEAAP 133
VP G +CP +A R G+PP HT T+ +I R W ++P
Sbjct: 510 VPTGPVCPECGRAFHA----RIGLPPTHTQHTNLDDIHRRDEWSSSP 552
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,245,616
Number of Sequences: 59808
Number of extensions: 514780
Number of successful extensions: 1288
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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