Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0547
         (702 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           27   0.57 
DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protei...    25   2.3  
DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protei...    24   4.0  
AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein p...    24   5.3  
DQ974166-1|ABJ52806.1|  494|Anopheles gambiae serpin 6 protein.        23   9.3  
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    23   9.3  
AB090824-1|BAC57923.1|  298|Anopheles gambiae gag-like protein p...    23   9.3  

>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 27.1 bits (57), Expect = 0.57
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 40  ELRDEYPDGTVRLRNPNIELMDQDILYHL 126
           ELRD++P G     NPNI   D++   HL
Sbjct: 609 ELRDDFPTGPDPNFNPNIFSEDEEDQQHL 637


>DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +1

Query: 151 SC*DVWRRQVCVHGRNTETHGTIRIHNHGGD 243
           SC  +  R    HG   E  G    HNHGGD
Sbjct: 195 SCKFLHDRSDYKHGWQMEQEGAGSGHNHGGD 225


>DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +1

Query: 151 SC*DVWRRQVCVHGRNTETHGTIRIHNHGGD 243
           SC  +  R    HG   E  G    HNHGGD
Sbjct: 195 SCKFLHDRSDYKHGWQMEQEGGGSGHNHGGD 225


>AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein
           protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 343 RYGHTFCRNPASRS 384
           R GH  C +PASRS
Sbjct: 527 RIGHMSCEHPASRS 540


>DQ974166-1|ABJ52806.1|  494|Anopheles gambiae serpin 6 protein.
          Length = 494

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 424 VLQNRNMWWYRLRRRYGCYFR*SRRWSPEEC-SRTDSFRK 540
           VL   +M W R+ +RYG     +   SPE   SR D +R+
Sbjct: 140 VLTPSSMNWKRMHQRYGNVL--ANLMSPEPIDSRRDQWRR 177


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 572 RLVRELKALADPEDPYDT 625
           RLVR L+ L +P D +DT
Sbjct: 236 RLVRGLERLNEPVDKWDT 253


>AB090824-1|BAC57923.1|  298|Anopheles gambiae gag-like protein
           protein.
          Length = 298

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 134 GAASHDLVEMFGDVKFVCMGGTPKRM 211
           GAA+H  V    DVK +  GG P R+
Sbjct: 262 GAANHKAVNCTNDVKCLLCGG-PHRI 286


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 784,072
Number of Sequences: 2352
Number of extensions: 16957
Number of successful extensions: 41
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71504505
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)