Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0547
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13646-2|AAP68930.1|  295|Caenorhabditis elegans Hypothetical pr...   134   8e-32
U97011-2|AAB52325.2|  689|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AC024880-3|AAF60915.3|  675|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF068713-9|AAC17800.1|  284|Caenorhabditis elegans Serpentine re...    29   4.3  
AF068713-1|AAC17794.1|  206|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z92838-2|CAB07408.1|  211|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U41274-1|AAA82458.1|  188|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U13646-2|AAP68930.1|  295|Caenorhabditis elegans Hypothetical
           protein ZK783.2 protein.
          Length = 295

 Score =  134 bits (323), Expect = 8e-32
 Identities = 76/188 (40%), Positives = 99/188 (52%)
 Frame = +2

Query: 134 GAASHDLVEMFGDVKFVCMGGTPKRMEQFAYTIMAEIGHKLPCGTTLQDISHFSYRYSMY 313
           G  + D+  +FGD KFVC GG+P R + +A     E    +PC   L      S R+ +Y
Sbjct: 32  GVDTLDIPAVFGDTKFVCTGGSPGRFKLYAEWFAKEAN--IPCSENLSR----SDRFVIY 85

Query: 314 KVGPVLSISHGMGIPSVGILLHEVIKLMYHAKVRDPVFFRXXXXXXXXXXXXXXXXSDEA 493
           K GPV  I+HGMG PS+ I+L E  KLM+HA V++P F R                S EA
Sbjct: 86  KTGPVCWINHGMGTPSLSIMLVESFKLMHHAGVKNPTFIRLGTSGGVGVPPGTVVVSTEA 145

Query: 494 VDGALRNVLELTVLGKIVQRPAKLDRRLVRELKALADPEDPYDTVTGKTMCTYDFYEGQG 673
           ++  L +     + GK ++RP +LD  L RE       E      TGKTMC  DFYEGQ 
Sbjct: 146 MNAELGDTYVQIIAGKRIERPTQLDAAL-REALCEVGKEKSIPVETGKTMCADDFYEGQM 204

Query: 674 RLNGAFCD 697
           RL+G FCD
Sbjct: 205 RLDGYFCD 212


>U97011-2|AAB52325.2|  689|Caenorhabditis elegans Hypothetical
           protein F31F7.2 protein.
          Length = 689

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 1/110 (0%)
 Frame = -3

Query: 469 TAFVAYTTTCSDSEEHRITDFRVVHQLYDFVKQDSD-RRYAHTVTYRKYRANFIHGVSVR 293
           TA +AY    S  EE+R    RV        KQ+       HT   ++      H   ++
Sbjct: 291 TALLAYAIY-SYHEENRRLRHRVTESERQLRKQNEYFTSQLHTEMQKQITYGEKHAEEMK 349

Query: 292 KMTDVLQCSSTRQLVPYLRHDCVCELFHAFRCSAHAHKLDVSKHLNKIMG 143
           K  D++Q    RQL    +     ++   F  + H H  D S+H  K  G
Sbjct: 350 KQQDMMQAQFDRQLDMAYQQGSKIQILPPFNQNPHFH--DHSEHTGKERG 397


>AC024880-3|AAF60915.3|  675|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.1 protein.
          Length = 675

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/27 (48%), Positives = 21/27 (77%)
 Frame = +2

Query: 512 NVLELTVLGKIVQRPAKLDRRLVRELK 592
           N+L+L  L +I++ PAKL RRL++ L+
Sbjct: 632 NILDLDELFQIMKHPAKLSRRLLQILQ 658


>AF068713-9|AAC17800.1|  284|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 68 protein.
          Length = 284

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 5   VYTTL*CHSITTSYVTNTQMALSDCVTLTLNSWTKIFSTIW 127
           VYT L  +     Y   TQ+A+ D  TL L +   + ST W
Sbjct: 196 VYTVLAQNQSAQVYSRATQIAMLDSTTLILFNLVPVMSTFW 236


>AF068713-1|AAC17794.1|  206|Caenorhabditis elegans Hypothetical
           protein T24A6.7 protein.
          Length = 206

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 262 TRQLVPYLRHDCVCELFHAFRCSAHAHKLDVSKHLN 155
           T+Q V + + DCV   F+    SA   + DV K++N
Sbjct: 12  TKQFVFFYKFDCVFSNFYPCEFSAQEFENDVEKNVN 47


>Z92838-2|CAB07408.1|  211|Caenorhabditis elegans Hypothetical
           protein T03D8.3 protein.
          Length = 211

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 229 CVCELFHAFRCSAHAHKLDVSKHLNKIM 146
           C+C+  H F C A     DVS+ L KI+
Sbjct: 126 CICDQEHMFNC-AEKEAQDVSESLQKIL 152


>U41274-1|AAA82458.1|  188|Caenorhabditis elegans Hypothetical
           protein T04G9.5 protein.
          Length = 188

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 457 AYTTTCSDSEEHRITDFRVVHQLYDFVKQDSDRRYAHTVTY 335
           A  T  +D+E H +T      + Y + +++ DRR+A   TY
Sbjct: 113 AQVTYYTDNENHHVTLTNTPGEGYIYRQREYDRRFAPKYTY 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,816,002
Number of Sequences: 27780
Number of extensions: 373423
Number of successful extensions: 939
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)